View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14842_low_3 (Length: 238)
Name: NF14842_low_3
Description: NF14842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14842_low_3 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 238
Target Start/End: Original strand, 49289798 - 49290026
Alignment:
| Q |
10 |
gagtagcaaaggtggtttcagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgt |
109 |
Q |
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| T |
49289798 |
gagtaacaaagatggtttcagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgt |
49289897 |
T |
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| Q |
110 |
gaatccagcagtatatgaacttgatgagataccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgtt |
209 |
Q |
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| T |
49289898 |
gaatccagcagtatatgaacttgatgagataccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgtt |
49289997 |
T |
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| Q |
210 |
ttcattggtggtgagcttgttggcggagc |
238 |
Q |
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| T |
49289998 |
ttcattggtggtgagcttgttggtggagc |
49290026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 238
Target Start/End: Original strand, 49296749 - 49296977
Alignment:
| Q |
10 |
gagtagcaaaggtggtttcagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgt |
109 |
Q |
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| T |
49296749 |
gagtaacaaagatggtttcagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgt |
49296848 |
T |
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| Q |
110 |
gaatccagcagtatatgaacttgatgagataccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgtt |
209 |
Q |
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| T |
49296849 |
gaatccagcagtatatgaacttgatgagataccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgtt |
49296948 |
T |
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| Q |
210 |
ttcattggtggtgagcttgttggcggagc |
238 |
Q |
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| T |
49296949 |
ttcattggtggtgagcttgttggtggagc |
49296977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 238
Target Start/End: Original strand, 49303479 - 49303707
Alignment:
| Q |
10 |
gagtagcaaaggtggtttcagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgt |
109 |
Q |
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| T |
49303479 |
gagtaacaaagatggtttcagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgt |
49303578 |
T |
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| Q |
110 |
gaatccagcagtatatgaacttgatgagataccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgtt |
209 |
Q |
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| T |
49303579 |
gaatccagcagtatatgaacttgatgagataccaagagggagagagattgaacaagcacttatttcaagacttggttcttctccatctgttccaactgtt |
49303678 |
T |
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| Q |
210 |
ttcattggtggtgagcttgttggcggagc |
238 |
Q |
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| T |
49303679 |
ttcattggtggtgagcttgttggtggagc |
49303707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 27 - 170
Target Start/End: Complemental strand, 6568113 - 6567970
Alignment:
| Q |
27 |
tcagaaaggccagtggtgatattcagcaagagttcatgttgcatgagtcatacaataaagacactattttgtgactttggtgtgaatccagcagtatatg |
126 |
Q |
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| T |
6568113 |
tcagagaggtcagtggtgatattcagcaagagtagttgttgcatgtgtcacacaatcaaaaccctcttcagtgactttggagtgaatccagaagttcatg |
6568014 |
T |
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| Q |
127 |
aacttgatgagataccaagagggagagagattgaacaagcactt |
170 |
Q |
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| T |
6568013 |
aacttgatgagatgagtggagggagagacattgaacaagcactt |
6567970 |
T |
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