View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14843_high_1 (Length: 517)

Name: NF14843_high_1
Description: NF14843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14843_high_1
NF14843_high_1
[»] chr4 (17 HSPs)
chr4 (108-367)||(53763435-53763694)
chr4 (366-464)||(53763883-53763978)
chr4 (261-426)||(10655482-10655647)
chr4 (261-426)||(10869627-10869792)
chr4 (469-500)||(9089104-9089135)
chr4 (469-500)||(10442587-10442618)
chr4 (469-500)||(21802120-21802151)
chr4 (469-500)||(22199493-22199524)
chr4 (469-500)||(24128473-24128504)
chr4 (469-500)||(36073583-36073614)
chr4 (469-500)||(44893013-44893044)
chr4 (469-500)||(44893660-44893691)
chr4 (469-500)||(46442078-46442109)
chr4 (469-500)||(47290300-47290331)
chr4 (469-500)||(53123265-53123296)
chr4 (246-307)||(982660-982721)
chr4 (13-42)||(53763340-53763369)
[»] chr6 (9 HSPs)
chr6 (248-350)||(6434795-6434897)
chr6 (469-501)||(33695126-33695158)
chr6 (469-500)||(17175821-17175852)
chr6 (469-500)||(17705269-17705300)
chr6 (469-500)||(18365374-18365405)
chr6 (469-500)||(18370638-18370669)
chr6 (469-500)||(28675382-28675413)
chr6 (469-500)||(32702439-32702470)
chr6 (469-500)||(33696931-33696962)
[»] chr8 (18 HSPs)
chr8 (469-501)||(14129092-14129124)
chr8 (469-500)||(1503643-1503674)
chr8 (469-500)||(1645764-1645795)
chr8 (469-500)||(3596841-3596872)
chr8 (469-500)||(6108033-6108064)
chr8 (469-500)||(10044582-10044613)
chr8 (469-500)||(15187794-15187825)
chr8 (469-500)||(17841650-17841681)
chr8 (469-500)||(20091601-20091632)
chr8 (469-500)||(24211172-24211203)
chr8 (469-500)||(25581039-25581070)
chr8 (469-500)||(26041913-26041944)
chr8 (469-500)||(32064980-32065011)
chr8 (469-500)||(34665615-34665646)
chr8 (469-500)||(37985856-37985887)
chr8 (469-500)||(38017167-38017198)
chr8 (469-500)||(40779929-40779960)
chr8 (469-500)||(42754842-42754873)
[»] chr7 (8 HSPs)
chr7 (469-501)||(3962211-3962243)
chr7 (469-501)||(35876477-35876509)
chr7 (469-500)||(15577647-15577678)
chr7 (469-500)||(25167656-25167687)
chr7 (469-500)||(35445631-35445662)
chr7 (469-500)||(42612045-42612076)
chr7 (469-500)||(48880727-48880758)
chr7 (469-501)||(15329507-15329539)
[»] chr5 (10 HSPs)
chr5 (469-501)||(37321593-37321625)
chr5 (469-500)||(2477870-2477901)
chr5 (469-500)||(3363013-3363044)
chr5 (469-500)||(3521807-3521838)
chr5 (469-500)||(4892436-4892467)
chr5 (469-500)||(6043312-6043343)
chr5 (469-500)||(8145607-8145638)
chr5 (469-500)||(12851036-12851067)
chr5 (469-500)||(25398472-25398503)
chr5 (469-500)||(33584129-33584160)
[»] chr3 (13 HSPs)
chr3 (469-501)||(48161139-48161171)
chr3 (469-500)||(3089653-3089684)
chr3 (469-500)||(3137214-3137245)
chr3 (469-500)||(3456298-3456329)
chr3 (469-500)||(3574326-3574357)
chr3 (469-500)||(6042111-6042142)
chr3 (469-500)||(19650700-19650731)
chr3 (469-500)||(22426145-22426176)
chr3 (469-500)||(33114028-33114059)
chr3 (469-500)||(33145946-33145977)
chr3 (469-500)||(34482688-34482719)
chr3 (469-500)||(37216853-37216884)
chr3 (469-500)||(37522287-37522318)
[»] scaffold0471 (1 HSPs)
scaffold0471 (469-500)||(13076-13107)
[»] scaffold0228 (2 HSPs)
scaffold0228 (469-500)||(16218-16249)
scaffold0228 (469-500)||(26170-26201)
[»] scaffold0204 (1 HSPs)
scaffold0204 (469-500)||(4630-4661)
[»] scaffold0096 (1 HSPs)
scaffold0096 (469-500)||(41244-41275)
[»] scaffold0085 (1 HSPs)
scaffold0085 (469-500)||(48083-48114)
[»] chr2 (9 HSPs)
chr2 (469-500)||(3989310-3989341)
chr2 (469-500)||(7475308-7475339)
chr2 (469-500)||(9293375-9293406)
chr2 (469-500)||(10662122-10662153)
chr2 (469-500)||(13355082-13355113)
chr2 (469-500)||(23267862-23267893)
chr2 (469-500)||(31174635-31174666)
chr2 (469-500)||(33380441-33380472)
chr2 (469-500)||(35160993-35161024)
[»] chr1 (11 HSPs)
chr1 (469-500)||(3559851-3559882)
chr1 (469-500)||(6883721-6883752)
chr1 (469-500)||(18404682-18404713)
chr1 (469-500)||(20304930-20304961)
chr1 (469-500)||(25463910-25463941)
chr1 (469-500)||(25973641-25973672)
chr1 (469-500)||(36966508-36966539)
chr1 (469-500)||(37821634-37821665)
chr1 (469-500)||(40215222-40215253)
chr1 (469-500)||(41876242-41876273)
chr1 (469-500)||(51737739-51737770)


Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 108 - 367
Target Start/End: Original strand, 53763435 - 53763694
Alignment:
Q  108 ctggtggagaatttcccaaccaatgtatgatgcaggtaaaccagccttttcaagtgtcaactcaattgactgtggctcatttcttattgcaaatttgaac 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53763435 ctggtggagaatttcccaaccaatgtatgatgcaggtaaaccagccttttcaagtgtcaactcaattgactgtggctcatttcttattgcaaatttgaac 53763534  T
Q  208 acttctttatcattcatatgagttgaaaacactactatttgagtcttgtgcattattagccccctcttcttttcatgcagcattcaaatgccgacatgaa 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  53763535 acttctttatcattcatatgagttgaaaacactactatttgagtcttgtgcattattagccccctcttcttttcatgcagcattcaaatgccaacatgaa 53763634  T
Q  308 attaaaataaatgatcaatcacataatacttaacattttgcacgtgtctgtgtgtaagga 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53763635 attaaaataaatgatcaatcacataatacttaacattttgcacgtgtctgtgtgtaagga 53763694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 366 - 464
Target Start/End: Original strand, 53763883 - 53763978
Alignment:
Q  366 gagtactatatacctatatctataactaatcaaatcagaagtaactaaaccatcttcctcacagttgcaagcctgaaatataatcataattaattatgg 464  Q
    |||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53763883 gagtactatatacctat---tataactaatcaaatcagaagtaactaaaccatcttcctcacagttgcaagcctgaaatataatcataattaattatgg 53763978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 261 - 426
Target Start/End: Original strand, 10655482 - 10655647
Alignment:
Q  261 tattagccccctcttcttttcatgcagcattcaaatgccgacatgaaattaaaataaatgatcaatcacataatacttaacattttgcacgtgtctgtgt 360  Q
    |||||||||| |||||||||||||||||||| ||||||| || |||||||| | |||||||| | ||||  || | |||||||| |||  |||| |||||    
T  10655482 tattagccccttcttcttttcatgcagcatttaaatgcctacgtgaaattatagtaaatgattattcactcaacaattaacattctgctggtgtttgtgt 10655581  T
Q  361 gtaaggagtactatatacctatatctataactaatcaaatcagaagtaactaaaccatcttcctca 426  Q
     || |||||||||  |||  |||||||| |||  |||||||| || ||| ||||| ||||||||||    
T  10655582 atagggagtactacctactcatatctatgacttttcaaatcaaaactaaataaacaatcttcctca 10655647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 261 - 426
Target Start/End: Original strand, 10869627 - 10869792
Alignment:
Q  261 tattagccccctcttcttttcatgcagcattcaaatgccgacatgaaattaaaataaatgatcaatcacataatacttaacattttgcacgtgtctgtgt 360  Q
    |||||||||| |||||||||||||||||||| ||||||| || |||||||| | |||||||| | ||||  || | |||||||| |||  |||| |||||    
T  10869627 tattagccccttcttcttttcatgcagcatttaaatgcctacgtgaaattatagtaaatgattattcactcaacaattaacattctgctggtgtttgtgt 10869726  T
Q  361 gtaaggagtactatatacctatatctataactaatcaaatcagaagtaactaaaccatcttcctca 426  Q
     || |||||||||  |||  |||||||| |||  |||||||| || ||| ||||| ||||||||||    
T  10869727 atagggagtactacctactcatatctatgacttttcaaatcaaaactaaataaacaatcttcctca 10869792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 9089135 - 9089104
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  9089135 atgctagatatcaagaatgattttataagaaa 9089104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 10442587 - 10442618
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  10442587 atgctagatatcaagaatgattttataagaaa 10442618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 21802120 - 21802151
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  21802120 atgctagatatcaagaatgattttataagaaa 21802151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 22199524 - 22199493
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  22199524 atgctagatatcaagaatgattttataagaaa 22199493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 24128504 - 24128473
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  24128504 atgctagatatcaagaatgattttataagaaa 24128473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 36073614 - 36073583
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  36073614 atgctagatatcaagaatgattttataagaaa 36073583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 44893013 - 44893044
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  44893013 atgctagatatcaagaatgattttataagaaa 44893044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 44893691 - 44893660
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  44893691 atgctagatatcaagaatgattttataagaaa 44893660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 46442109 - 46442078
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  46442109 atgctagatatcaagaatgattttataagaaa 46442078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 47290331 - 47290300
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  47290331 atgctagatatcaagaatgattttataagaaa 47290300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 53123296 - 53123265
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  53123296 atgctagatatcaagaatgattttataagaaa 53123265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 307
Target Start/End: Original strand, 982660 - 982721
Alignment:
Q  246 ttgagtcttgtgcattattagccccctcttcttttcatgcagcattcaaatgccgacatgaa 307  Q
    |||||||| |||||||||||| ||| ||||||||  |||| ||||||| ||||| |||||||    
T  982660 ttgagtctggtgcattattagtcccttcttctttatatgctgcattcagatgcctacatgaa 982721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 42
Target Start/End: Original strand, 53763340 - 53763369
Alignment:
Q  13 taatactaactctgagtgattactgcttcc 42  Q
    ||||||||||||||||||||||||||||||    
T  53763340 taatactaactctgagtgattactgcttcc 53763369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 248 - 350
Target Start/End: Complemental strand, 6434897 - 6434795
Alignment:
Q  248 gagtcttgtgcattattagccccctcttcttttcatgcagcattcaaatgccgacatgaaattaaaataaatgatcaatcacataatacttaacattttg 347  Q
    |||| ||||||||| ||| |||  ||||||||||||||| |||||||||| | ||||||||| |||||| ||||| |||||||||| |||||||||| ||    
T  6434897 gagtgttgtgcattgttacccctttcttcttttcatgcaccattcaaatgactacatgaaatgaaaatatatgattaatcacataacacttaacattctg 6434798  T
Q  348 cac 350  Q
    |||    
T  6434797 cac 6434795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 501
Target Start/End: Original strand, 33695126 - 33695158
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaat 501  Q
    |||||||||||||||||||||||||||||||||    
T  33695126 atgctagatatcaagaatgattttataagaaat 33695158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 17175821 - 17175852
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  17175821 atgctagatatcaagaatgattttataagaaa 17175852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 17705269 - 17705300
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  17705269 atgctagatatcaagaatgattttataagaaa 17705300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 18365374 - 18365405
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  18365374 atgctagatatcaagaatgattttataagaaa 18365405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 18370638 - 18370669
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  18370638 atgctagatatcaagaatgattttataagaaa 18370669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 28675413 - 28675382
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  28675413 atgctagatatcaagaatgattttataagaaa 28675382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 32702470 - 32702439
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  32702470 atgctagatatcaagaatgattttataagaaa 32702439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 33696962 - 33696931
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  33696962 atgctagatatcaagaatgattttataagaaa 33696931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 501
Target Start/End: Complemental strand, 14129124 - 14129092
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaat 501  Q
    |||||||||||||||||||||||||||||||||    
T  14129124 atgctagatatcaagaatgattttataagaaat 14129092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 1503643 - 1503674
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  1503643 atgctagatatcaagaatgattttataagaaa 1503674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 1645764 - 1645795
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  1645764 atgctagatatcaagaatgattttataagaaa 1645795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 3596841 - 3596872
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  3596841 atgctagatatcaagaatgattttataagaaa 3596872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 6108033 - 6108064
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  6108033 atgctagatatcaagaatgattttataagaaa 6108064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 10044613 - 10044582
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  10044613 atgctagatatcaagaatgattttataagaaa 10044582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 15187825 - 15187794
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  15187825 atgctagatatcaagaatgattttataagaaa 15187794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 17841650 - 17841681
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  17841650 atgctagatatcaagaatgattttataagaaa 17841681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 20091601 - 20091632
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  20091601 atgctagatatcaagaatgattttataagaaa 20091632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 24211172 - 24211203
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  24211172 atgctagatatcaagaatgattttataagaaa 24211203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 25581039 - 25581070
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  25581039 atgctagatatcaagaatgattttataagaaa 25581070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 26041913 - 26041944
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  26041913 atgctagatatcaagaatgattttataagaaa 26041944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 32065011 - 32064980
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  32065011 atgctagatatcaagaatgattttataagaaa 32064980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 34665646 - 34665615
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  34665646 atgctagatatcaagaatgattttataagaaa 34665615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 37985856 - 37985887
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  37985856 atgctagatatcaagaatgattttataagaaa 37985887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 38017198 - 38017167
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  38017198 atgctagatatcaagaatgattttataagaaa 38017167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 40779929 - 40779960
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  40779929 atgctagatatcaagaatgattttataagaaa 40779960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 42754842 - 42754873
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  42754842 atgctagatatcaagaatgattttataagaaa 42754873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 501
Target Start/End: Complemental strand, 3962243 - 3962211
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaat 501  Q
    |||||||||||||||||||||||||||||||||    
T  3962243 atgctagatatcaagaatgattttataagaaat 3962211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 501
Target Start/End: Complemental strand, 35876509 - 35876477
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaat 501  Q
    |||||||||||||||||||||||||||||||||    
T  35876509 atgctagatatcaagaatgattttataagaaat 35876477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 15577647 - 15577678
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  15577647 atgctagatatcaagaatgattttataagaaa 15577678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 25167656 - 25167687
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  25167656 atgctagatatcaagaatgattttataagaaa 25167687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 35445662 - 35445631
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  35445662 atgctagatatcaagaatgattttataagaaa 35445631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 42612076 - 42612045
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  42612076 atgctagatatcaagaatgattttataagaaa 42612045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 48880727 - 48880758
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  48880727 atgctagatatcaagaatgattttataagaaa 48880758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 469 - 501
Target Start/End: Complemental strand, 15329539 - 15329507
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaat 501  Q
    ||||||||||| |||||||||||||||||||||    
T  15329539 atgctagatataaagaatgattttataagaaat 15329507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 501
Target Start/End: Original strand, 37321593 - 37321625
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaat 501  Q
    |||||||||||||||||||||||||||||||||    
T  37321593 atgctagatatcaagaatgattttataagaaat 37321625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 2477901 - 2477870
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  2477901 atgctagatatcaagaatgattttataagaaa 2477870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 3363044 - 3363013
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  3363044 atgctagatatcaagaatgattttataagaaa 3363013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 3521807 - 3521838
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  3521807 atgctagatatcaagaatgattttataagaaa 3521838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 4892467 - 4892436
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  4892467 atgctagatatcaagaatgattttataagaaa 4892436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 6043312 - 6043343
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  6043312 atgctagatatcaagaatgattttataagaaa 6043343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 8145638 - 8145607
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  8145638 atgctagatatcaagaatgattttataagaaa 8145607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 12851067 - 12851036
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  12851067 atgctagatatcaagaatgattttataagaaa 12851036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 25398503 - 25398472
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  25398503 atgctagatatcaagaatgattttataagaaa 25398472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 33584129 - 33584160
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  33584129 atgctagatatcaagaatgattttataagaaa 33584160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 469 - 501
Target Start/End: Complemental strand, 48161171 - 48161139
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaat 501  Q
    |||||||||||||||||||||||||||||||||    
T  48161171 atgctagatatcaagaatgattttataagaaat 48161139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 3089684 - 3089653
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  3089684 atgctagatatcaagaatgattttataagaaa 3089653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 3137214 - 3137245
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  3137214 atgctagatatcaagaatgattttataagaaa 3137245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 3456329 - 3456298
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  3456329 atgctagatatcaagaatgattttataagaaa 3456298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 3574326 - 3574357
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  3574326 atgctagatatcaagaatgattttataagaaa 3574357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 6042142 - 6042111
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  6042142 atgctagatatcaagaatgattttataagaaa 6042111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 19650700 - 19650731
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  19650700 atgctagatatcaagaatgattttataagaaa 19650731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 22426145 - 22426176
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  22426145 atgctagatatcaagaatgattttataagaaa 22426176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 33114059 - 33114028
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  33114059 atgctagatatcaagaatgattttataagaaa 33114028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 33145977 - 33145946
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  33145977 atgctagatatcaagaatgattttataagaaa 33145946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 34482688 - 34482719
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  34482688 atgctagatatcaagaatgattttataagaaa 34482719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 37216853 - 37216884
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  37216853 atgctagatatcaagaatgattttataagaaa 37216884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 37522318 - 37522287
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  37522318 atgctagatatcaagaatgattttataagaaa 37522287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 13107 - 13076
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  13107 atgctagatatcaagaatgattttataagaaa 13076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 16249 - 16218
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  16249 atgctagatatcaagaatgattttataagaaa 16218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 26201 - 26170
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  26201 atgctagatatcaagaatgattttataagaaa 26170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 4661 - 4630
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  4661 atgctagatatcaagaatgattttataagaaa 4630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 41275 - 41244
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  41275 atgctagatatcaagaatgattttataagaaa 41244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 48114 - 48083
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  48114 atgctagatatcaagaatgattttataagaaa 48083  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 3989341 - 3989310
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  3989341 atgctagatatcaagaatgattttataagaaa 3989310  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 7475308 - 7475339
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  7475308 atgctagatatcaagaatgattttataagaaa 7475339  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 9293375 - 9293406
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  9293375 atgctagatatcaagaatgattttataagaaa 9293406  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 10662153 - 10662122
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  10662153 atgctagatatcaagaatgattttataagaaa 10662122  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 13355113 - 13355082
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  13355113 atgctagatatcaagaatgattttataagaaa 13355082  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 23267862 - 23267893
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  23267862 atgctagatatcaagaatgattttataagaaa 23267893  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 31174635 - 31174666
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  31174635 atgctagatatcaagaatgattttataagaaa 31174666  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 33380472 - 33380441
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  33380472 atgctagatatcaagaatgattttataagaaa 33380441  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 35161024 - 35160993
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  35161024 atgctagatatcaagaatgattttataagaaa 35160993  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 3559882 - 3559851
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  3559882 atgctagatatcaagaatgattttataagaaa 3559851  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 6883752 - 6883721
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  6883752 atgctagatatcaagaatgattttataagaaa 6883721  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 18404713 - 18404682
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  18404713 atgctagatatcaagaatgattttataagaaa 18404682  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 20304930 - 20304961
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  20304930 atgctagatatcaagaatgattttataagaaa 20304961  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 25463941 - 25463910
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  25463941 atgctagatatcaagaatgattttataagaaa 25463910  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 25973672 - 25973641
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  25973672 atgctagatatcaagaatgattttataagaaa 25973641  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 36966508 - 36966539
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  36966508 atgctagatatcaagaatgattttataagaaa 36966539  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 37821634 - 37821665
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  37821634 atgctagatatcaagaatgattttataagaaa 37821665  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 40215253 - 40215222
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  40215253 atgctagatatcaagaatgattttataagaaa 40215222  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 41876242 - 41876273
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  41876242 atgctagatatcaagaatgattttataagaaa 41876273  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 51737770 - 51737739
Alignment:
Q  469 atgctagatatcaagaatgattttataagaaa 500  Q
    ||||||||||||||||||||||||||||||||    
T  51737770 atgctagatatcaagaatgattttataagaaa 51737739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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