View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14843_high_10 (Length: 216)
Name: NF14843_high_10
Description: NF14843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14843_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 7097093 - 7096896
Alignment:
| Q |
1 |
tgacttttcttacagttcttctcagatgttgacttctagttttcgacatttgctgatagtgtaagggggagctcaaggtgcagactgcagaggaatattt |
100 |
Q |
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| T |
7097093 |
tgacttttcttacagttcttctcagatgctgacttctagttttcgacatttgctgatagtgtaagggggagctcaaggtgcagactgcagaggaatattt |
7096994 |
T |
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| Q |
101 |
acattgtgctattcaagctgattctaatgatggtgaaatcgtgatttgattcactatgtgaagcccgagtgggagaaccatcacgacagagattgagc |
198 |
Q |
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| T |
7096993 |
acattgtgctattcaagctgattctaatgatggtgaaatcgtgatttgattcactatgtgaagcccgagtgggagaaccatcacgacagagatagagc |
7096896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 6 - 198
Target Start/End: Original strand, 7584221 - 7584401
Alignment:
| Q |
6 |
tttcttacagttcttctcagatgttgacttctagttttcgacatttgctgatagtgtaagggggagctcaaggtgcagactgcagaggaatatttacatt |
105 |
Q |
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| T |
7584221 |
tttcttatagttcttctcagatgctgatttctaatttttgacatttgctgatagtataagggggagcttca-------aatacagaggaatattttcatt |
7584313 |
T |
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| Q |
106 |
gtgctattcaagctgattctaatgatggtgaaatcgtgatttgattcactatgtgaagcccgagtgggagaaccatcacgacagagattgagc |
198 |
Q |
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| T |
7584314 |
gtgctactcaagataatcctaatgatggtgaaat-----attgattcactatgcgaagctcgagtgggagaaccgtcacggcagagatagagc |
7584401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 193
Target Start/End: Original strand, 32492217 - 32492393
Alignment:
| Q |
6 |
tttcttacagttcttctcagatgttgacttctagttttcgacatttgctgatagtgtaagggggagctcaaggtgcagactgcagaggaatatttacatt |
105 |
Q |
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| T |
32492217 |
tttcttatagttcttatcagatgctgacgtctaattttcatcatctactgatagggtaagggggagcttca-----aga-tgcagaggagtactttcatc |
32492310 |
T |
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| Q |
106 |
gtgctattcaagctgattctaatgatggtgaaatcgtgatttgattcactatgtgaagcccgagtgggagaaccatcacgacagagat |
193 |
Q |
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| T |
32492311 |
gggctactctagctgaccctaatgatggcgaaat-----tttgatgcactatgcgaagctggtgtgggagaaccatcacgacagagat |
32492393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 9622938 - 9623001
Alignment:
| Q |
10 |
ttacagttcttctcagatgttgacttctagttttcgacatttgctgatagtgtaagggggagct |
73 |
Q |
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| T |
9622938 |
ttacggttcttctcagatgttgacttctaattttagacatttattgatagtgtaagggggagct |
9623001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 13614307 - 13614244
Alignment:
| Q |
10 |
ttacagttcttctcagatgttgacttctagttttcgacatttgctgatagtgtaagggggagct |
73 |
Q |
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|||| |||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||| |
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| T |
13614307 |
ttacggttcttctcagatgttgacttctaattttagacatttattgatagtgtaagggggagct |
13614244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 181
Target Start/End: Complemental strand, 17981164 - 17981094
Alignment:
| Q |
106 |
gtgctattcaagctgattctaatgatggtgaaatcgtgatttgattcactatgtgaagcccgagtgggagaaccat |
181 |
Q |
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| T |
17981164 |
gtgctactctagctgatcctaatgatggtgaaatc-----ttgattcactatgcgaagcacgagagggagaaccat |
17981094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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