View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14843_low_1 (Length: 733)
Name: NF14843_low_1
Description: NF14843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14843_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 677; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 1 - 717
Target Start/End: Complemental strand, 56290283 - 56289569
Alignment:
| Q |
1 |
agaagaactaatgaacacattaacctccaaaaactatttttcttggggaaagaggaactaagttccacatgtcgtcgtcatacgcgggaacaatcatctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56290283 |
agaagaactaatgaacacattaacctccaaaaactatttttcttggggaaagaggaactaagttccacatgtcgtcgtcatacgcgggaacaatcatctc |
56290184 |
T |
|
| Q |
101 |
atcatggctttcctttaactcaattgagagagcctcactaaaattcctaggaagaaagacaaaagacaaagtagacataatagcataataagataaagat |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56290183 |
atcatggctttcatttaactcaattgagagagcctcactaaaattcctaggaagaaagacaaaagacaaagtagacataatagcataataagataaagat |
56290084 |
T |
|
| Q |
201 |
aaacatcatcaaaaagtttatcattcatattgtccagatcaacagtatgaaaatctttggagtcgggcattcttcaattgatagtaacctcgaatgacat |
300 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
56290083 |
aaacatcatcaaaaagttt-tcattcatattgtccagatcaacagtatgaaaatcgttggagtcgggcattcttcaattgatagaaacctcgaatgacat |
56289985 |
T |
|
| Q |
301 |
tccatctgcataatgagaggtttctgctgaggatatgactgaatctcgacaattcgtcttctagaatccaccgatgggttcaagggatataaagaatgac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56289984 |
tccatctgcataatgagaggtttctgctgaggatatgactgaatctcgacaattcgtcttctagaatccaccgatgggttcaagggatataaagaatgac |
56289885 |
T |
|
| Q |
401 |
aaaaataggagtaggtaaagcctcaaaaagtatactaggttcaaccttagattaaggagctaaaatatggtgcctcttcaaagaaggtaacatctaaaaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
56289884 |
aaaaataggagtaggtaaagcctcaaaaagtatactaggttcaaccttagattaaggacctaaaatatggtgcctcttcaaagaaggtaacatctaaaaa |
56289785 |
T |
|
| Q |
501 |
gtatattgctggattggaggaattaggtacttattagctattgacaataaaaaattataaaatgagtaatgtgtaaaagcaggacccacttaaacatcca |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
56289784 |
gtatattgctggattggaggaattaggtacttattagctattgacattaaaaaattataaaatgagtaacgtgtaaaagcaggacccacttaaacatcca |
56289685 |
T |
|
| Q |
601 |
aatgggggagctccattgtggatgctggaagatctctaattctctattttgtagttcttattcaggaataacatgttgactgagtttagcaaagatatta |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56289684 |
aatgggggagctccattgtggatgctggaagatctctaattctctattttgtagttcttattcaggaataacatgttgactgagtttagcaaagatatta |
56289585 |
T |
|
| Q |
701 |
agcgttgataatagttt |
717 |
Q |
| |
|
| ||||||||||||||| |
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|
| T |
56289584 |
a-cgttgataatagttt |
56289569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 507 - 602
Target Start/End: Complemental strand, 17450695 - 17450600
Alignment:
| Q |
507 |
tgctggattggaggaattaggtacttattagctattgacaataaaaaattataaaatgagtaatgtgtaaaagcaggacccacttaaacatccaaa |
602 |
Q |
| |
|
|||||| ||||||||||| || ||||| | |||||||| |||||||||||||||||| | ||||||| | | ||||||||||||||| ||||| |
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|
| T |
17450695 |
tgctgggttggaggaattgagtggttatttgatattgacattaaaaaattataaaatgaatgatgtgtacatgtgggacccacttaaacacccaaa |
17450600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 507 - 624
Target Start/End: Original strand, 13125385 - 13125502
Alignment:
| Q |
507 |
tgctggattggaggaattaggtacttattagctattgacaataaaaaattataaaatgagtaatgtgtaaaagcaggacccacttaaacatccaaatggg |
606 |
Q |
| |
|
|||||| || ||||||||| ||||||||||| |||| ||| |||||||||||||||||| | ||||||| | | |||||||||||| | ||||||| || |
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|
| T |
13125385 |
tgctgggtttgaggaattaagtacttattaggtattaacattaaaaaattataaaatgaatgatgtgtacatgtgggacccacttaagcgtccaaatagg |
13125484 |
T |
|
| Q |
607 |
ggagctccattgtggatg |
624 |
Q |
| |
|
| ||||||||||| |||| |
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|
| T |
13125485 |
gaagctccattgtagatg |
13125502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 514 - 624
Target Start/End: Complemental strand, 37104044 - 37103934
Alignment:
| Q |
514 |
ttggaggaattaggtacttattagctattgacaataaaaaattataaaatgagtaatgtgtaaaagcaggacccacttaaacatccaaatgggggagctc |
613 |
Q |
| |
|
||||||||||| || |||||||| |||| ||| |||||||||||||||||| |||| ||| | | |||||||||||| ||||||||| ||||| ||| |
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|
| T |
37104044 |
ttggaggaattgagtgcttattaggtattaacattaaaaaattataaaatgaataataggtacatgtgggacccacttaagcatccaaataggggaactc |
37103945 |
T |
|
| Q |
614 |
cattgtggatg |
624 |
Q |
| |
|
||||| ||||| |
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|
| T |
37103944 |
cattgcggatg |
37103934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 507 - 612
Target Start/End: Complemental strand, 22832204 - 22832099
Alignment:
| Q |
507 |
tgctggattggaggaattaggtacttattagctattgacaataaaaaattataaaatgagtaatgtgtaaaagcaggacccacttaaacatccaaatggg |
606 |
Q |
| |
|
|||||| ||||||||||| |||||||||| |||||||| |||||||||||||||||| | |||||| | | |||| |||||||||| |||||| | |
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|
| T |
22832204 |
tgctgggttggaggaattgagtacttattaagtattgacattaaaaaattataaaatgaatgttgtgtacatacgggactcacttaaacacccaaataag |
22832105 |
T |
|
| Q |
607 |
ggagct |
612 |
Q |
| |
|
|||||| |
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|
| T |
22832104 |
ggagct |
22832099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 514 - 620
Target Start/End: Complemental strand, 22823378 - 22823273
Alignment:
| Q |
514 |
ttggaggaattaggtacttattagctattgacaataaaaaattataaaatgagtaatgtgtaaaagcaggacccacttaaacatccaaatgggggagctc |
613 |
Q |
| |
|
||||||||||| |||||||| || |||||||| |||||||||||||||||| | |||||| | | |||| |||||||||| |||||| ||||||| |
|
|
| T |
22823378 |
ttggaggaattgagtacttataag-tattgacattaaaaaattataaaatgaatgttgtgtacatgtgggactcacttaaacacccaaataacggagctc |
22823280 |
T |
|
| Q |
614 |
cattgtg |
620 |
Q |
| |
|
|| |||| |
|
|
| T |
22823279 |
caatgtg |
22823273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 507 - 624
Target Start/End: Original strand, 32474195 - 32474312
Alignment:
| Q |
507 |
tgctggattggaggaattaggtacttattagctattgacaataaaaaattataaaatgagtaatgtgtaaaagcaggacccacttaaacatccaaatggg |
606 |
Q |
| |
|
|||||| ||||||||||| || |||||||| |||||||| |||||||||||||||||| | ||||||| | | |||||||| ||| || ||||| || |
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|
| T |
32474195 |
tgctgggttggaggaattgagtgcttattaggtattgacattaaaaaattataaaatgaatgatgtgtacatgtgggacccacgtaagcactcaaatagg |
32474294 |
T |
|
| Q |
607 |
ggagctccattgtggatg |
624 |
Q |
| |
|
||||| |||||||||| |
|
|
| T |
32474295 |
agagctatattgtggatg |
32474312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 514 - 612
Target Start/End: Complemental strand, 17349872 - 17349774
Alignment:
| Q |
514 |
ttggaggaattaggtacttattagctattgacaataaaaaattataaaatgagtaatgtgtaaaagcaggacccacttaaacatccaaatgggggagct |
612 |
Q |
| |
|
||||||||||| || ||||||| |||||| | |||||||||||||||| | | ||||||| | | |||||||||||| | ||||||| |||||||| |
|
|
| T |
17349872 |
ttggaggaattgagtgattattaggtattgatattaaaaaattataaaataaatgatgtgtacatgtgggacccacttaagcttccaaataggggagct |
17349774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 531 - 626
Target Start/End: Complemental strand, 33661520 - 33661425
Alignment:
| Q |
531 |
ttattagctattgacaataaaaaattataaaatgagtaatgtgtaaaagcaggacccacttaaacatccaaatggg-ggagctccattgtggatgct |
626 |
Q |
| |
|
||||||| || | ||| ||||||||||| || ||||| ||||||| | || |||||||||||| ||||||| |||| |||||||||||||||||||| |
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|
| T |
33661520 |
ttattaggtactaacattaaaaaattattaa-tgagtgatgtgtacatgctggacccacttaagcatccaagtgggaggagctccattgtggatgct |
33661425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 514 - 565
Target Start/End: Complemental strand, 1987753 - 1987702
Alignment:
| Q |
514 |
ttggaggaattaggtacttattagctattgacaataaaaaattataaaatga |
565 |
Q |
| |
|
||||||||||| || |||||||| |||||||| |||||||||||||||||| |
|
|
| T |
1987753 |
ttggaggaattgagtccttattagatattgacagtaaaaaattataaaatga |
1987702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 518 - 624
Target Start/End: Complemental strand, 20351062 - 20350956
Alignment:
| Q |
518 |
aggaattaggtacttattagctattgacaataaaaaattataaaatgagtaatgtgtaaaagcaggacccacttaaacatccaaatgggggagctccatt |
617 |
Q |
| |
|
||||||| ||| |||||||| |||||||| |||||| ||||||||||| | ||||||| | | ||||||||| || |||| | ||||||||| ||| |
|
|
| T |
20351062 |
aggaattgggtgcttattaggtattgacattaaaaatttataaaatgaatgatgtgtacatttgtggcccacttaagcacccaactaggggagctcaatt |
20350963 |
T |
|
| Q |
618 |
gtggatg |
624 |
Q |
| |
|
||||||| |
|
|
| T |
20350962 |
gtggatg |
20350956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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