View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14843_low_12 (Length: 247)
Name: NF14843_low_12
Description: NF14843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14843_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 47546525 - 47546304
Alignment:
| Q |
18 |
attgtaagactcaactcttatataactcaattattttatgctttcaagtgtatatttagattaaatgtgagtttggcaaaatacgaactcacgatagttc |
117 |
Q |
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| T |
47546525 |
attgtaagactcaactcttatataactcaattattttatgctttcaagtgtatatttagattaaatgtgagttttgcaaactacgaactcacgatagttc |
47546426 |
T |
|
| Q |
118 |
atcttgattttgacaatcttaccgttaataaaaaacatgcaccgacttgtgctaaaattagtccttaatacaattttattttttgaaacaggtcaagtgt |
217 |
Q |
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||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47546425 |
atcttgattttgacaatcttaccgttaatcaaaaacatgtaccgacttgtgct--aattagtccttaatacaattttattttttgaaacaggtcaagtgt |
47546328 |
T |
|
| Q |
218 |
aggaacattgttactgatattctt |
241 |
Q |
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|||||||||||||||||||||||| |
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| T |
47546327 |
aggaacattgttactgatattctt |
47546304 |
T |
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