View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14843_low_13 (Length: 238)
Name: NF14843_low_13
Description: NF14843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14843_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 23966480 - 23966272
Alignment:
| Q |
19 |
ggatattctatgttcaaacgtgctgaaatattttaacaataagagtgctaatttagtatttgaggnnnnnnnnntcaaattattgaaacctaactaacag |
118 |
Q |
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| T |
23966480 |
ggatattctatgttcaaacgtgctgaaatattttaacaataagagtactaatttagtatttgaggaaaaaaaa-tcaaattattgaaacctaactgacag |
23966382 |
T |
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| Q |
119 |
atataagcttaccaaggcgatctagagctgaagagggcatgataactgaatggaaaaagaatttgtattagctatcaaaaagaatttcacaatgtctgat |
218 |
Q |
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| T |
23966381 |
atataagcttaccaaggcgatctagagctgaagagggcatgataactgaaaggaaaaagaatttgtattagctatcaa----aatttcacaatgtttgat |
23966286 |
T |
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| Q |
219 |
accaaataatacaa |
232 |
Q |
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|||||||||||||| |
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| T |
23966285 |
accaaataatacaa |
23966272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 23990222 - 23990006
Alignment:
| Q |
19 |
ggatattctatgttcaaacgtgctgaaatattttaacaataagagtgctaatttagtatttgaggnnnnnnnnn---tcaaattattgaaacctaactaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| | | |
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| T |
23990222 |
ggatattctatgttcaaacgtgctgaaatattttaacaataagagtactaatttagtatttgaggaaaaaaaaaaaatcaaattattgaaacctaaatga |
23990123 |
T |
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| Q |
116 |
cagatataagcttaccaaggcgatctagagctgaagagggcatgataactgaatggaaaaagaatttgtattagctatcaaaaagaatttcacaatgtct |
215 |
Q |
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|| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
23990122 |
caaatataaacttaccaaggcgatctagagctgaagagggcatgataactgaaaggaaaaagaatttgtattagctgtcaaaaagaatttcacaatgttt |
23990023 |
T |
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| Q |
216 |
gataccaaataatacaa |
232 |
Q |
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| T |
23990022 |
gataccaaataatacaa |
23990006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 23983528 - 23983318
Alignment:
| Q |
19 |
ggatattctatgttcaaacgtgctgaaatattttaacaataagagtgctaatttagtatttgaggnnnnnnnnntcaaattattgaaacctaactaacag |
118 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||| | ||||||||| || |||| ||||||||||||||||||| | ||| |
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| T |
23983528 |
ggatattctatgttcaaacgtgctgaaagagtttaacaataata---ctaatttagcatgggaggaaaaaataatcaaattattgaaacctaaatgacaa |
23983432 |
T |
|
| Q |
119 |
atataagcttaccaaggcgatctagagctgaagagggcatgataactgaatggaaaaagaatttgtattagctatcaaaaagaatttcacaatgtctgat |
218 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23983431 |
atataaacttaccaaggctatctagagctgaagagggcatgataactgaaaggaaaaagaatttgtattagctatcaaaaagaatttcacaatgtttgat |
23983332 |
T |
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| Q |
219 |
accaaataatacaa |
232 |
Q |
| |
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|||||||||||||| |
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| T |
23983331 |
accaaataatacaa |
23983318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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