View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14843_low_5 (Length: 388)
Name: NF14843_low_5
Description: NF14843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14843_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 14 - 371
Target Start/End: Original strand, 32955510 - 32955867
Alignment:
| Q |
14 |
attattctcatcaatattttctttctcttgtttttaactttattatgtcttactagttactagannnnnnnnnngctttctacaatctcataacccttgt |
113 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32955510 |
attattctcatcaatattttctttctcttgcttttaactttattatgtcttactagttactagattttttttttcctttctacaatctcataacccttgt |
32955609 |
T |
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| Q |
114 |
cgattttctgcgtgtaagcataccctttaagaaataggaaaaggccaatatataaagtggtgataaaggtatatagtttcaggtgcacaaataataaaac |
213 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32955610 |
ccattttctgcgtgtaagcataccctttaagaaataggaaaaggccaatatataaagtggtgataaaggtatatagtttcaggtgcacaaataataaaac |
32955709 |
T |
|
| Q |
214 |
acatggatgagcctcagagctacacactgacacagtttgatcaaacctggaacgttcactcactgatctgaactcaaaccgcttgtcctatgattttatt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32955710 |
acatggatgagcctcagagctacacactgacacagtttgatcaaacctgggacgttcactcactgatctgaactcaaaccgcttgtcctatgattttatt |
32955809 |
T |
|
| Q |
314 |
cttttcctatgtgtttctgtctctatttaaatcgcgatatatgaagcacatatattct |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32955810 |
cttttcctatgtgtttctgtctctatttaaatcgcgatatatgaagcacatatattct |
32955867 |
T |
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