View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14843_low_6 (Length: 386)
Name: NF14843_low_6
Description: NF14843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14843_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 13 - 365
Target Start/End: Original strand, 39583777 - 39584130
Alignment:
| Q |
13 |
atgaaccaagattatacaaaggatcgtctcaagtaaggtaagctactgctatctgtatctaacaaaggaactnnnnnnn-gtgaaatcccaccgttgaga |
111 |
Q |
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| T |
39583777 |
atgaaccaagattatacaaaggatcgtctcaagtaaggtaagctactgctatctgtatctaacaaaggaactaaaaaaaagtgaaatcccaccattgaga |
39583876 |
T |
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| Q |
112 |
gtaaagttgagggagactatgaccattctcagcaagctcatcggcaacagaatttctttctcttacatgttttcatcaacttttagataaaccttgttga |
211 |
Q |
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| T |
39583877 |
gtaaagttgagggagactatgaccattctcagcaagctcatcggcaacagaatttccttctcttacatgttttcatcaacttttagataaaccttgttga |
39583976 |
T |
|
| Q |
212 |
tgacatttgaacgagctttacacatggcctccaagggaattaacttcggagtagtggctccttttccttcagtcatatcaatttcttcctcatttattct |
311 |
Q |
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| T |
39583977 |
tgacatttgaacgagctttacacatggcctccaagggaattagcttcggagtagtggctccttttccttcagtcatatcaatttcttcctcacttattct |
39584076 |
T |
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| Q |
312 |
tttccaatcaaaacattgtataagtaatgccaaagttaaactaactgtacgttg |
365 |
Q |
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| T |
39584077 |
tttccaatcaaaacattggataagtaatgccaaagttaaactaactgtacgttg |
39584130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 177 - 326
Target Start/End: Original strand, 39572566 - 39572713
Alignment:
| Q |
177 |
catgttttcatcaacttttagataaaccttgttgatgacatttgaacgagctttacacatggcctccaagggaattaacttcggagtagtggctcctttt |
276 |
Q |
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|||||||||| | |||||||| |||||||||||||||||||||| |||||| ||||||||||||| ||||||||| ||| ||||||||| |||||||| |
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| T |
39572566 |
catgttttcaccggcttttagaaaaaccttgttgatgacatttgagcgagctatacacatggcctctaagggaattggctttggagtagtgactcctttt |
39572665 |
T |
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| Q |
277 |
ccttcagtcatatcaatttcttcctcatttattcttttccaatcaaaaca |
326 |
Q |
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| T |
39572666 |
ccttaactc--atcaatttctttctcacttattattttccaatcgaaaca |
39572713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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