View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14843_low_7 (Length: 314)
Name: NF14843_low_7
Description: NF14843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14843_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 18 - 152
Target Start/End: Original strand, 38934130 - 38934266
Alignment:
| Q |
18 |
aaatgaaaactgaacgaaatttgaaacaggtggagagatattagaggttgccaatttatcaacaaaaggacattgaataatgaaaagagaaaaataaaaa |
117 |
Q |
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| T |
38934130 |
aaatgaaaactgaacgaaatttgaaacaggtggagagatattagaggttgccaatttatcaacaaaaggacattgaataatgaaaagagaaaaataaaaa |
38934229 |
T |
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| Q |
118 |
tgttttaattttctttg--ttgagagaagaaatgtag |
152 |
Q |
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| T |
38934230 |
tgttttaattttctttgttttgagagaagaaatgtag |
38934266 |
T |
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Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 223 - 266
Target Start/End: Original strand, 38934278 - 38934321
Alignment:
| Q |
223 |
caagaagaagaaggaaatgtcttagttgatgatgcgagataaag |
266 |
Q |
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| T |
38934278 |
caagaagaagaaggaaatgtcttagttgatgatgcgagataaag |
38934321 |
T |
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