View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14843_low_9 (Length: 276)
Name: NF14843_low_9
Description: NF14843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14843_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 266
Target Start/End: Complemental strand, 36232833 - 36232586
Alignment:
| Q |
17 |
gttaggtccttcaggaacgttaaatacaactactccttgtgctgcatgtaagcttttgagacgaaggtgtgcccaagaatgccctttttctccatatttc |
116 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36232833 |
gttaggtccttcaggaacactaaatacaactactccttgtgctgcatgcaagcttttgagacgaaggtgtgcccaagaatgccctttttctccatatttc |
36232734 |
T |
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| Q |
117 |
tctcctcatgagcctcagaagtttgcttctgttcacaaagtctttggtgccagcaacgtctcaaagttactattggtatatacacatataaaaccttagt |
216 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36232733 |
tctcctcatgagcctcagaagtttgcttctgtccacaaagtctttggtgctagcaacgtctcaaagttgctattggtatatacacatataaaaccttagt |
36232634 |
T |
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| Q |
217 |
tcattattacaaatatttcactatttgttaactgatttagctgtttattt |
266 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
36232633 |
tcattattacaaatatttca--atttgttaactgatttagctgttgattt |
36232586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 51 - 193
Target Start/End: Complemental strand, 31869448 - 31869306
Alignment:
| Q |
51 |
ccttgtgctgcatgtaagcttttgagacgaaggtgtgcccaagaatgccctttttctccatatttctctcctcatgagcctcagaagtttgcttctgttc |
150 |
Q |
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|||||||||||||||||||| |||||| |||| ||||| | ||||||||||| ||||| ||||| || || ||||||||||| || ||||| |||||| |
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| T |
31869448 |
ccttgtgctgcatgtaagctattgagaagaagatgtgctgaggaatgccctttctctccttatttttcaccacatgagcctcaaaaatttgcagctgttc |
31869349 |
T |
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| Q |
151 |
acaaagtctttggtgccagcaacgtctcaaagttactattggt |
193 |
Q |
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| T |
31869348 |
ataaagtctttggtgctagcaatgtctctaaattgctattggt |
31869306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 43201030 - 43200866
Alignment:
| Q |
17 |
gttaggtccttcaggaacgttaaatacaactactccttgtgctgcatgtaagcttttgagacgaaggtgtgcccaagaatgccctttttctccatatttc |
116 |
Q |
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||||||||| ||||||| ||||||| | || |||||||| ||||||||||| || ||| |||| ||||| ||||| || || |||||||| |||||| |
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| T |
43201030 |
gttaggtccaccaggaaccctaaatactataaccccttgtgcagcatgtaagctattaagaagaagatgtgctcaagagtgtcccttttctccctatttc |
43200931 |
T |
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| Q |
117 |
tctcctcatgagcctcagaagtttgcttctgttcacaaagtctttggtgccagcaacgtctcaaa |
181 |
Q |
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| T |
43200930 |
tctcctcatgaaccccaaaagtttgcttctgttcacaaagtttttggtgccagcaacgtctcaaa |
43200866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 172
Target Start/End: Complemental strand, 32513234 - 32513116
Alignment:
| Q |
54 |
tgtgctgcatgtaagcttttgagacgaaggtgtgcccaagaatgccctttttctccatatttctctcctcatgagcctcagaagtttgcttctgttcaca |
153 |
Q |
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||||||||||| || ||| | ||| |||| ||||| ||||| || | ||| |||| || ||| || || |||||||||| || |||||| |||||||| |
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| T |
32513234 |
tgtgctgcatgcaaacttctcagaagaagatgtgctcaagattgtctctttgctccttacttccctgctgatgagcctcacaaatttgctaatgttcaca |
32513135 |
T |
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| Q |
154 |
aagtctttggtgccagcaa |
172 |
Q |
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||||||||||||| ||||| |
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| T |
32513134 |
aagtctttggtgctagcaa |
32513116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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