View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14844_high_1 (Length: 470)
Name: NF14844_high_1
Description: NF14844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14844_high_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 440; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Original strand, 35934791 - 35935245
Alignment:
| Q |
1 |
agtggacttatctcctgcttttttatagtcagaagttgtgtttgagtaggaaaatcccactcctgctggagactctaagaagagtatatttgcaactgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35934791 |
agtggacttatctcctgcttttttatagtcagaagttgtgtttgagtaggaaaatcccactcctgctggagactctaagaagagtatatttgcaactgca |
35934890 |
T |
|
| Q |
101 |
tatattttataatgataaattggttagactgttcatgtctcttaaatgcataatggagaaaacatttaatcatatcgattatgattgtcttaccttcact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35934891 |
tatattttataatgataaattggttaga-tgttcatgtctcttaaatgcataatggagaaaacatttaatcatatcgattatgattgtcataccttcact |
35934989 |
T |
|
| Q |
201 |
ccaagcatattggttacggtataatgtttttccatcagagttgactctgaagggtcctagctcctcaaaggctccatacccaagtgaagaacagccaggt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35934990 |
ccaagcatattggttacggtataatgtttttccatcagagttgactctgaagggtcctagctcctcaaaggctccatacccaagtgaagaacagccaggt |
35935089 |
T |
|
| Q |
301 |
cctgtgtgtttcaaatattatgttatcagcatcaaatttttcaaactctagagtctaggtaaacatgtgtagcttctgtagactcgactcatatgcttgt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35935090 |
cctgtgtgtttcaaatattatgttatcagcatcaaatttttcaaactctagagtctaggtaaacatgtgtagcttctgtagactcgactcatatacttgt |
35935189 |
T |
|
| Q |
401 |
tagtaaaatcaaatgtgttttactactatgtttcactactatgaaaatgaagttat |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35935190 |
tagtaaaatcaaatgtgttttactactatgtttcactactatgaaaatgaagttat |
35935245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 8 - 363
Target Start/End: Original strand, 35927985 - 35928335
Alignment:
| Q |
8 |
ttatctcctgcttttttatagtcagaagttgtgtttgagtaggaaaatcccactcctgctggagactctaagaagagtatatttgcaactgcatatattt |
107 |
Q |
| |
|
|||||||||| || | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| || |
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|
| T |
35927985 |
ttatctcctgacttgtcatagtcagaagttgtgtttgaataggaaaatcccactcctgctggagactctaagaatagtacatttgcaactgcatat--tt |
35928082 |
T |
|
| Q |
108 |
tataatgataaattggttagactgttcatgtctct---taaatgcataatggagaaaacatttaatcatatcgattatgattgtcttaccttcactccaa |
204 |
Q |
| |
|
||||||||||| |||| || | ||||||||| ||||||||| || ||||| |||| || ||||||| |||||| | ||||||| ||||| |
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|
| T |
35928083 |
cataatgataaactggtaagt-tattcatgtctaagaataaatgcatcata-agaaacaatttcattctatcgat---gattgtttcaccttcagtccaa |
35928177 |
T |
|
| Q |
205 |
gcatattggttacggtataatgtttttccatcagagttgactctgaagggtcctagctcctcaaaggctccatacccaagtgaagaacagccaggtcctg |
304 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||| |
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|
| T |
35928178 |
gcatattggttacggtatagtgttttgccatcagagttgattctgaagggtcctagctcctgaaaggctccataccccagtgaggaacagccaggtcctg |
35928277 |
T |
|
| Q |
305 |
tgtgtttcaaatattatgttatcagcatcaaatttttcaaactctagagtctaggtaaa |
363 |
Q |
| |
|
| |||||||| |||||||| |||| |||||| | |||||||| ||||| |||||||| |
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|
| T |
35928278 |
taagtttcaaacattatgttgtcagaatcaaagctgtcaaactcgagagt-taggtaaa |
35928335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 8 - 409
Target Start/End: Original strand, 35940361 - 35940767
Alignment:
| Q |
8 |
ttatctcctgcttttttatagtcagaagttgtgtttgagtaggaaaatcccactcctgctggagactctaagaagagtatatttgcaactgcatatattt |
107 |
Q |
| |
|
|||||||||| ||| | ||||||||| ||||||||||||||||||||||| | |||||||||||| || |||||||||| || || ||||||||| || |
|
|
| T |
35940361 |
ttatctcctgatttgtcatagtcagatgttgtgtttgagtaggaaaatcctattcctgctggagattccaagaagagtacgttcgccactgcatat--tt |
35940458 |
T |
|
| Q |
108 |
tataatgataaa--ttggttagactgttcatgtctcttaaatgcataatggagaaaacatttaatcatatcgattatgat------tgtcttaccttcac |
199 |
Q |
| |
|
||||||||| | || || ||| | |||||||||| |||||||| || ||||| || |||| |||| ||| ||||| ||| | ||||||| |
|
|
| T |
35940459 |
cataatgatataagtttgtaaga-tattcatgtctcagaaatgcatcataaagaaacaatgtaattatattgatgatgatgatgattgtttcaccttcat |
35940557 |
T |
|
| Q |
200 |
tccaagcatattggttacggtataatgtttttccatcagagttgactctgaagggtcctagctcctcaaaggctccatacccaagtgaagaacagccagg |
299 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35940558 |
tccaagcatatgggttacggtatagtgtttttccatcagagttgactctgaagggtccgagctcctgaaaggctccatacccaagtgaagaacagccagg |
35940657 |
T |
|
| Q |
300 |
tcctgtgtgtttcaaatattatgttatcagcatcaaatttttcaaactctagagtctaggtaaacatgtgtagcttctgtagactcgactcatatgcttg |
399 |
Q |
| |
|
||||||||| |||||| |||||||| || ||| ||||| | ||||| |||| |||||||||| | | ||||||||||||||| | ||||| |||| |
|
|
| T |
35940658 |
tcctgtgtggttcaaacattatgttgtcgtaatcgaatttgttaaacttgagaggctaggtaaactttttgagcttctgtagactcaaatcataaacttg |
35940757 |
T |
|
| Q |
400 |
ttagtaaaat |
409 |
Q |
| |
|
||||| |||| |
|
|
| T |
35940758 |
ttagtgaaat |
35940767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 5 - 336
Target Start/End: Original strand, 35910582 - 35910917
Alignment:
| Q |
5 |
gacttatctcctgcttttttatagtcagaagttgtgtttgagtaggaaaatcccactcctgctggagactctaagaagagtatatttgcaactgcatata |
104 |
Q |
| |
|
||||||||||||| ||| | ||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||| || || ||||||||| |
|
|
| T |
35910582 |
gacttatctcctgatttgtcatagtcagatgttgtgtttgagtaggaaaatcctactcctgctggagattctaagaagagtacgttcgccactgcatat- |
35910680 |
T |
|
| Q |
105 |
ttttataatgataaa--ttggttagactgttcatgtctcttaaatgcataatggagaaaacatttaatcatatcgattatgat------tgtcttacctt |
196 |
Q |
| |
|
|| ||||||||| | ||||| ||| | |||||||||| |||||||| || ||||| || |||| |||| ||| ||||| ||| | ||||| |
|
|
| T |
35910681 |
-ttcataatgatataagttggtaaga-tattcatgtctcagaaatgcatcata-agaaacaatgtaattatattgatgatgatgatgattgtttcacctt |
35910777 |
T |
|
| Q |
197 |
cactccaagcatattggttacggtataatgtttttccatcagagttgactctgaagggtcctagctcctcaaaggctccatacccaagtgaagaacagcc |
296 |
Q |
| |
|
|| ||||||||||| |||||||||||| |||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||| |||||||| |
|
|
| T |
35910778 |
cattccaagcatatgggttacggtatagtgttttgccatcagagttgattctgaagggtcctagctcctgaaaggctccataccccagtgaggaacagcc |
35910877 |
T |
|
| Q |
297 |
aggtcctgtgtgtttcaaatattatgttatcagcatcaaa |
336 |
Q |
| |
|
|||||||||| |||||||| |||||||| |||| |||||| |
|
|
| T |
35910878 |
aggtcctgtgagtttcaaacattatgttgtcagaatcaaa |
35910917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 2 - 353
Target Start/End: Original strand, 35915014 - 35915361
Alignment:
| Q |
2 |
gtggacttatctcctgcttttttatagtcagaagttgtgtttgagtaggaaaatcccactcctgctggagactctaagaagagtatatttgcaactgcat |
101 |
Q |
| |
|
|||||||||||||||| || | ||||||||| ||||||||||||||||||||||| |||||||| ||||| || |||||||||| |||||||||||||| |
|
|
| T |
35915014 |
gtggacttatctcctgaattgtcatagtcagatgttgtgtttgagtaggaaaatcctactcctgccggagattccaagaagagtacatttgcaactgcat |
35915113 |
T |
|
| Q |
102 |
atattttataatgataaa--ttggttagactgttcatgtctcttaaatgcataatggagaaaacatttaatcatatcgattatgattgtcttaccttcac |
199 |
Q |
| |
|
|| || |||| |||| | ||||| ||| | ||||||||| |||||| || ||||| | ||| | |||| ||| |||||||| ||||||| |
|
|
| T |
35915114 |
at--ttcataaggatataagttggtaaga-taatcatgtctcaggcatgcatcataaagaaataaattagttatattgat---gattgtctcaccttcat |
35915207 |
T |
|
| Q |
200 |
tccaagcatattggttacggtataatgtttttccatcagagttgactctgaagggtcctagctcctcaaaggctccatacccaagtgaagaacagccagg |
299 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| ||||| | |||||||||||| || ||||| ||||| ||||| |
|
|
| T |
35915208 |
tccaagcatatgggttgcggtataatgtttttccatcagaattgactctgaagggtccgagctcttgaaaggctccatatcccagtgaggaacaaccagg |
35915307 |
T |
|
| Q |
300 |
tcctgtgtgtttcaaatattatgttatcagcatcaaatttttcaaactctagag |
353 |
Q |
| |
|
||||| | |||||||| |||||||| ||| ||| || |||||||||| |||| |
|
|
| T |
35915308 |
tcctgcgagtttcaaacattatgttgtcaaaatcgaagctttcaaactcgagag |
35915361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 35921385 - 35921768
Alignment:
| Q |
1 |
agtggacttatctcctgcttttttatagtcagaagttgtgtttgagtaggaaaatcccactcctgctggagactctaagaagagtatatttgcaactgca |
100 |
Q |
| |
|
||||||||||||||||| || | |||||| || | ||||||||||||||||||||| || ||||||||||| || |||||||||| |||||| |||||| |
|
|
| T |
35921385 |
agtggacttatctcctgaattgtcatagtccgatgatgtgtttgagtaggaaaatcctacccctgctggagattccaagaagagtacatttgccactgca |
35921484 |
T |
|
| Q |
101 |
tatattttataatga--taaattggttagactgttcatgtctcttaaatgcataatggagaaaacatttaatcatatcgattatgattgtcttaccttca |
198 |
Q |
| |
|
||| || |||| || ||| || | ||| | ||||||||| |||||||| || | || ||||| | | |||||||| || || || ||||||| |
|
|
| T |
35921485 |
tat--ttcataaggagttaagtttctaaga-taatcatgtctcagaaatgcatcataaataacacatt-agttatatcgatgatcat---ctcaccttca |
35921577 |
T |
|
| Q |
199 |
ctccaagcatattggttacggtataatgtttttccatcagagttgactctgaagggtcctagctcctcaaaggctccatacccaagtgaagaacagccag |
298 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| || ||||| ||||| |||| |
|
|
| T |
35921578 |
ttccaagcatatgggttacggtataatgttttgccatcagagttgactctgaagggtccgagctcctcaaaggctccatatcccagtgaggaacaaccag |
35921677 |
T |
|
| Q |
299 |
gtcctgtgtgtttcaaatattatgttatcagcatcaaatttttcaaactctagagtctaggtaaacatgtgtagcttctgtagactcgact |
389 |
Q |
| |
|
|||||||| |||||||| |||||| | ||| || || | |||||| |||||||| |||||| ||| ||||||||||||||||||| |
|
|
| T |
35921678 |
gtcctgtgagtttcaaacattatgatgtcaaaattgaagctgacaaacttgagagtctaagtaaacttgttgagcttctgtagactcgact |
35921768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 6208979 - 6209023
Alignment:
| Q |
39 |
tgtttgagtaggaaaatcccactcctgctggagactctaagaaga |
83 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
6208979 |
tgtttgaataggaaaatccaactcctgctggagactctaaaaaga |
6209023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 6178241 - 6178299
Alignment:
| Q |
41 |
tttgagtaggaaaatcccactcctgctggagactctaagaagagtatatttgcaactgc |
99 |
Q |
| |
|
||||| || |||||||| ||||||||||||||||||| ||||| |||||||| ||||| |
|
|
| T |
6178241 |
tttgaataagaaaatccaactcctgctggagactctaggaagataatatttgccactgc |
6178299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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