View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14844_high_12 (Length: 237)
Name: NF14844_high_12
Description: NF14844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14844_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 4 - 220
Target Start/End: Complemental strand, 1630048 - 1629828
Alignment:
| Q |
4 |
attatacttgaggctttcttacat----acaattactttaattttttattttaaataattactcttggatcatttaaatttaggtattgatggacttcac |
99 |
Q |
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| T |
1630048 |
attatacttgaggctttcttacatgcatacaattactttcattttttattttaaataattactcttggatcatttaaatttaggtattgatggacttcac |
1629949 |
T |
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| Q |
100 |
ttcattgcacgagacataaccttccaaaataccgccggtccacacaagggtcaagctgtggcgctaagatcagcctccgatctctcagttttctatcggt |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
1629948 |
ttcattgcacgagacataaccttccaaaataccgccggtccacacaagggtcaagctgtggcgctaagatcagcgtccgatctctcagttttctatcggt |
1629849 |
T |
|
| Q |
200 |
gtgccatatcaggttatcaag |
220 |
Q |
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||||||||||||||||||||| |
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| T |
1629848 |
gtgccatatcaggttatcaag |
1629828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 61 - 220
Target Start/End: Complemental strand, 1606689 - 1606530
Alignment:
| Q |
61 |
ctcttggatcatttaaatttaggtattgatggacttcacttcattgcacgagacataaccttccaaaataccgccggtccacacaagggtcaagctgtgg |
160 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1606689 |
ctcttggatcatttaaatttaggtattgatggacttcacttcattgcacgtgacataaccttccaaaataccgccggtccacacaagggtcaagcagtgg |
1606590 |
T |
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| Q |
161 |
cgctaagatcagcctccgatctctcagttttctatcggtgtgccatatcaggttatcaag |
220 |
Q |
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| T |
1606589 |
cgctaagatcagcctccgatctctcagttttctatcggtgtgccatatcaggttatcaag |
1606530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 4 - 220
Target Start/End: Original strand, 10820658 - 10820870
Alignment:
| Q |
4 |
attatacttgaggctttcttacatacaattactttaattttttattttaaataattactcttggatcatttaaatttaggtattgatggacttcacttca |
103 |
Q |
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|||||| ||| ||||||||||| |||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10820658 |
attataattgtggctttcttacctacaattactttcatat----ttttaaataattactcttggatcatttaaatttaggtattgatggacttcacttca |
10820753 |
T |
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| Q |
104 |
ttgcacgagacataaccttccaaaataccgccggtccacacaagggtcaagctgtggcgctaagatcagcctccgatctctcagttttctatcggtgtgc |
203 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||| || ||||| |||||| | |
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| T |
10820754 |
ttgcacgtgacataaccttccaaaataccgccggtccacacaagggtcaagcagtggcgctccgatcagcctctgatctctccgtcttctaccggtgtac |
10820853 |
T |
|
| Q |
204 |
catatcaggttatcaag |
220 |
Q |
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||||| ||||| |||| |
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| T |
10820854 |
aatatcgggttaccaag |
10820870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 61 - 220
Target Start/End: Complemental strand, 1623811 - 1623652
Alignment:
| Q |
61 |
ctcttggatcatttaaatttaggtattgatggacttcacttcattgcacgagacataaccttccaaaataccgccggtccacacaagggtcaagctgtgg |
160 |
Q |
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|||||| ||| |||||||| ||| |||||||||||||| ||||||||||| ||||| ||||| |||||||| || ||||| ||||| || |||||||||| |
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| T |
1623811 |
ctcttgaatcttttaaattcaggcattgatggacttcatttcattgcacgtgacattacctttcaaaatactgctggtcctcacaaaggccaagctgtgg |
1623712 |
T |
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| Q |
161 |
cgctaagatcagcctccgatctctcagttttctatcggtgtgccatatcaggttatcaag |
220 |
Q |
| |
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|||| ||||||||||||||||||| || |||||||||||||| ||||| || ||||||| |
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| T |
1623711 |
cgctccgatcagcctccgatctctctgtcttctatcggtgtgctatatcgggctatcaag |
1623652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 61 - 209
Target Start/End: Complemental strand, 18781505 - 18781357
Alignment:
| Q |
61 |
ctcttggatcatttaaatttaggtattgatggacttcacttcattgcacgagacataaccttccaaaataccgccggtccacacaagggtcaagctgtgg |
160 |
Q |
| |
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|||||| ||| |||||||| ||| |||||||||||||| |||||||| || |||||||||||||||||||| || ||||| || || ||||||||||||| |
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| T |
18781505 |
ctcttgaatcttttaaattcaggcattgatggacttcatttcattgcccgcgacataaccttccaaaatactgctggtcctcataaaggtcaagctgtgg |
18781406 |
T |
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| Q |
161 |
cgctaagatcagcctccgatctctcagttttctatcggtgtgccatatc |
209 |
Q |
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|||| ||||||||||||||||||| || |||||||||||||| ||||| |
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| T |
18781405 |
cgctccgatcagcctccgatctctctgtcttctatcggtgtgctatatc |
18781357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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