View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14844_high_2 (Length: 420)

Name: NF14844_high_2
Description: NF14844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14844_high_2
NF14844_high_2
[»] chr6 (2 HSPs)
chr6 (156-401)||(32679640-32679885)
chr6 (182-229)||(32679630-32679676)
[»] chr2 (3 HSPs)
chr2 (218-400)||(28136025-28136203)
chr2 (19-109)||(28135839-28135930)
chr2 (111-191)||(28135955-28136035)
[»] chr3 (3 HSPs)
chr3 (193-359)||(2230444-2230609)
chr3 (111-190)||(2230576-2230655)
chr3 (19-87)||(2230704-2230772)
[»] chr8 (3 HSPs)
chr8 (246-374)||(44806667-44806795)
chr8 (19-109)||(44806913-44807003)
chr8 (124-191)||(44806806-44806873)


Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 156 - 401
Target Start/End: Original strand, 32679640 - 32679885
Alignment:
Q  156 aggtttagaagtcaggtacaaccataaaggatgaaaaggtttagaagtcaggtacaacccacaaaggatgaaaaccaacaatacttgtttgttatctcaa 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  32679640 aggtttagaagtcaggtacaaccataaaggatgaaaaggtttagaagtcaggtacaacccataaaggatgaaaaccaacaatacttgtttgttatcttaa 32679739  T
Q  256 atatcatgtaaaacacatcataacagcttagctacatgaagaaagagactccatatatgcaaaaatagcatcgcacagttttcaatagaacacatgacag 355  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32679740 atatcatgtaaaacacatcctaacagcttagctacatgaagaaagagactccatatatgcaaaaatagcatcgcacagttttcaatagaacacatgacag 32679839  T
Q  356 ttcaaataatgagcggaattataataccttctatacaagtagtgca 401  Q
    |||||||||||||||||||||||||||||| |||||||||||||||    
T  32679840 ttcaaataatgagcggaattataataccttatatacaagtagtgca 32679885  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 32679630 - 32679676
Alignment:
Q  182 aaggatgaaaaggtttagaagtcaggtacaacccacaaaggatgaaaa 229  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  32679630 aaggatgaaaaggtttagaagtcaggtacaa-ccataaaggatgaaaa 32679676  T

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Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 218 - 400
Target Start/End: Original strand, 28136025 - 28136203
Alignment:
Q  218 aaaggatgaaaaccaacaatacttgtttgttatctcaaatatcatgtaaaacacatcataacagcttagctacatgaagaaagagactccatatatgc-a 316  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||| |    
T  28136025 aaaggatgaaagccaacaatacttatttgttatctcaaatatcatgtaaaacacatcataac-----agctacatgaagaaagagactccatatatgcaa 28136119  T
Q  317 aaaatagcatcgcacagttttcaatagaacacatgacagttcaaataatgagcggaattataataccttctatacaagtagtgc 400  Q
    |||| ||||||||| |||   ||||||||||  |||||||||||||||||||| |||  ||| ||||||  |||| ||||||||    
T  28136120 aaaacagcatcgcatagtcaccaatagaacatgtgacagttcaaataatgagcagaacaatactaccttggatacgagtagtgc 28136203  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 28135839 - 28135930
Alignment:
Q  19 ggcataggataatgaatcattcagctcgcccaagtaataaaagacctaagattaaggagcaaaacaaaatcagat-gccaaaacacaaacca 109  Q
    ||||||||||| ||| ||||||||||| |||||||||||||| ||||||||| ||||||| ||| ||||| |||| |  |||||||||||||    
T  28135839 ggcataggatagtgagtcattcagctcacccaagtaataaaatacctaagataaaggagcgaaaaaaaattagatagtaaaaacacaaacca 28135930  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 191
Target Start/End: Original strand, 28135955 - 28136035
Alignment:
Q  111 gaataataatatgtggatatgaaaaaacttaaggcctccggtgataggtttagaagtcaggtacaaccataaaggatgaaa 191  Q
    ||||||||||||  |||||||||||||| ||||| ||| |||||| |||||||||| | |||||||  | |||||||||||    
T  28135955 gaataataatatagggatatgaaaaaacataaggactctggtgattggtttagaagccgggtacaataaaaaaggatgaaa 28136035  T

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Target: chr3 (Bit Score: 91; Significance: 6e-44; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 193 - 359
Target Start/End: Complemental strand, 2230609 - 2230444
Alignment:
Q  193 ggtttagaagtcaggtacaacccacaaaggatgaaaaccaacaatacttgtttgttatctcaaatatcatgtaaaacacatcataacagcttagctacat 292  Q
    |||||||||| ||||||||| | | ||||||||||  || | |||| || |||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  2230609 ggtttagaagccaggtacaatcaa-aaaggatgaaggccgaaaatatttatttgctatctcaaatatcatgtaaaacacatcataacagcttagccacat 2230511  T
Q  293 gaagaaagagactccatatatgcaaaaatagcatcgcacagttttcaatagaacacatgacagttca 359  Q
    |||||||||||||||||||||||||||| |||||||| | ||| |||||||||||  ||||||||||    
T  2230510 gaagaaagagactccatatatgcaaaaacagcatcgctcggttatcaatagaacatgtgacagttca 2230444  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 111 - 190
Target Start/End: Complemental strand, 2230655 - 2230576
Alignment:
Q  111 gaataataatatgtggatatgaaaaaacttaaggcctccggtgataggtttagaagtcaggtacaaccataaaggatgaa 190  Q
    |||||||||||| ||||||| ||||||||||||||||| |||||| |||||||||| ||||||||| || ||||||||||    
T  2230655 gaataataatatatggatataaaaaaacttaaggcctctggtgattggtttagaagccaggtacaatcaaaaaggatgaa 2230576  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 2230772 - 2230704
Alignment:
Q  19 ggcataggataatgaatcattcagctcgcccaagtaataaaagacctaagattaaggagcaaaacaaaa 87  Q
    ||||||||||| ||| |||||||||||||||||||||| ||||||||||||| ||||||| ||| ||||    
T  2230772 ggcataggatagtgagtcattcagctcgcccaagtaattaaagacctaagataaaggagcgaaaaaaaa 2230704  T

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Target: chr8 (Bit Score: 89; Significance: 9e-43; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 246 - 374
Target Start/End: Complemental strand, 44806795 - 44806667
Alignment:
Q  246 gttatctcaaatatcatgtaaaacacatcataacagcttagctacatgaagaaagagactccatatatgcaaaaatagcatcgcacagttttcaatagaa 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| |||||||| |||||||||||||| |||||||||    
T  44806795 gttatctcaaatatcatgtaaaacacatcataacagcttagctacttgacgaaagagactccgtatgtgcaaaaacagcatcgcacagttatcaatagaa 44806696  T
Q  346 cacatgacagttcaaataatgagcggaat 374  Q
    ||  ||||| |||||||||||||| ||||    
T  44806695 catgtgacaattcaaataatgagcagaat 44806667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 44807003 - 44806913
Alignment:
Q  19 ggcataggataatgaatcattcagctcgcccaagtaataaaagacctaagattaaggagcaaaacaaaatcagatgccaaaacacaaacca 109  Q
    ||||||||||| ||| ||||||| |||||||||||||||||||||||||||| ||||||| ||  |||||||||| | |||| ||||||||    
T  44807003 ggcataggatagtgagtcattcaactcgcccaagtaataaaagacctaagataaaggagcgaagaaaaatcagatactaaaatacaaacca 44806913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 191
Target Start/End: Complemental strand, 44806873 - 44806806
Alignment:
Q  124 tggatatgaaaaaacttaaggcctccggtgataggtttagaagtcaggtacaaccataaaggatgaaa 191  Q
    |||||||||||||||||||| |||| |||||| |||||||||| | ||||||| || |||| ||||||    
T  44806873 tggatatgaaaaaacttaagtcctctggtgattggtttagaagccgggtacaatcaaaaagaatgaaa 44806806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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