View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14844_high_4 (Length: 380)
Name: NF14844_high_4
Description: NF14844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14844_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 17 - 365
Target Start/End: Original strand, 3470340 - 3470684
Alignment:
| Q |
17 |
taaattgaactatcatcttttgaatgaaggataatgcttaacatcgctaatttattgattgcgacaacatcaccagcgttcttagtagttgaaggctt-a |
115 |
Q |
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| T |
3470340 |
taaattgaactatcatcttttgaatgaaggataatgcttaacatcgctaatttattgattgcgacaacatcaccagcgttcttagtagttgaaggcttaa |
3470439 |
T |
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| Q |
116 |
aaactcttacccctatacctgctgtttttctggaaaag--acagagatttgattggttgattactgagtcgtttcgtgagtaattcatgataaattgtct |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3470440 |
aaactcttacccctatacctgctgtttttctggaaaagaaaaagagatttgattggttgattactgagtcgtttcgtgagtaattcatgataaattgtct |
3470539 |
T |
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| Q |
214 |
cgtcgtaaatagcagcgctcttgcttgaatggtcgaggatcaatggctggataaacagttgtgatttaggtccgtgacagccccaaataccattggtgct |
313 |
Q |
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| T |
3470540 |
cgtcgtaaatagcagcgctcttgct-------tcgaggatcagtggctggataaacagttgtgatttaggtccgtgacagccccaaataccattggtgct |
3470632 |
T |
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| Q |
314 |
ctaatcgacaataatgacacctcaccacaacaccaagtttgttcataaaatt |
365 |
Q |
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| T |
3470633 |
ctaattgacaataatgacacctcaccacaacaccaagtttgttcataaaatt |
3470684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 45 - 233
Target Start/End: Original strand, 13253395 - 13253578
Alignment:
| Q |
45 |
ggataatgcttaacatcgctaatttattgattgcgacaacatcaccagcgttcttagtagttgaaggcttaaaactcttacccctatacctgctgt-ttt |
143 |
Q |
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| T |
13253395 |
ggataatgcttggcatcgcgaatttactgatagcgacaacatcacgaatgttcgaaatagctgaaagcttaaaactctaacccctttacctaccgtgttt |
13253494 |
T |
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| Q |
144 |
tctggaaaagacagagatttgattggttgattactgagtcgtttcgtgagtaattcatgataaattgtctcgtcgtaaatagcagcgctc |
233 |
Q |
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| T |
13253495 |
tccggaaaaca-agagatttggttggttaattattga-----ttcgtgagtaatttttgagaaattgtgtcgctgtaaatagcagcgctc |
13253578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 137
Target Start/End: Original strand, 38833223 - 38833315
Alignment:
| Q |
46 |
gataatgcttaacatcgctaatttattgattgcgacaacatcaccagcgttcttagt-agttgaaggcttaaaactcttacccctatacctgc |
137 |
Q |
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|||||||||| ||||||| |||||| ||| ||||||||||||| || |||| ||| || ||||||| ||||||||| |||||| ||||||| |
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| T |
38833223 |
gataatgcttgacatcgcaaatttacagatcgcgacaacatcacgagtgttcaaagtaagctgaaggcataaaactctaacccctttacctgc |
38833315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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