View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14844_low_3 (Length: 406)
Name: NF14844_low_3
Description: NF14844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14844_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 19 - 399
Target Start/End: Complemental strand, 43601574 - 43601194
Alignment:
| Q |
19 |
actgaattgtcaacaaaaataaaatttgagttacaagacatcattttaagatccctggatttctgttccatgataagtaggatggatctccaagaggtct |
118 |
Q |
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| T |
43601574 |
actgaattgtcaacaaaaataaaatttgagttacaagacatcattttaagatccctggatttctgttccatgataagtaggatggatctccaagaggtct |
43601475 |
T |
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| Q |
119 |
gcaaatagagaaatatagcaatgttagctcaaagtgctacttacagataaccaaaaatgtttcagcttttctctaccatgtaaccatatgaatttgctaa |
218 |
Q |
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| T |
43601474 |
gcaaatagagaaatatagcaatgttagctcaaagtgctacttacagataaccaaaaatgtttcagcttttctctaccatgtaaccatatgaatttgctaa |
43601375 |
T |
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| Q |
219 |
cataaatttgatcagaactcatcgatttcaaccaatagaaaagaccgtattcaaatgttattgttacagaatgtgtcgctagcatttcacatatataatg |
318 |
Q |
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| T |
43601374 |
cataaatttgatcagaactcatcgatttcaaccaatagaatagaccgtattcaaatgttattgttacagaatgtgtcgctagcatttcacatatataatg |
43601275 |
T |
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| Q |
319 |
taaaatcatgatctttgctcataaaaaataaatgtagaaccataaagtattatagaataagcacaatatttcctttacctt |
399 |
Q |
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| T |
43601274 |
taaaatcatgatctttgctcataaaaaataaatgtagaaccataaagtagtatagaataagcacaatatttcctttacctt |
43601194 |
T |
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