View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14845_high_6 (Length: 298)
Name: NF14845_high_6
Description: NF14845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14845_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 49764284 - 49764566
Alignment:
| Q |
1 |
gatccaagtcagccctgactcagtcttccccacctatgcacaatgtgcctatagttagggggagagggcgagaagaaagggtcgtcgtgggaagacgtga |
100 |
Q |
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| T |
49764284 |
gatccaagtcagccctgactcagtcttccccacctatgcacaatgtgcctatagtcagggggagagggcgagaagaaagggtcgtcgtgggaagacgtga |
49764383 |
T |
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| Q |
101 |
actggagcagttccgctttcctctagggtaannnnnnnataaataccaaacctacgctcccaaagaggagatgacctatattcactacctactactctga |
200 |
Q |
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| T |
49764384 |
attggagtagttccgctttcctctagggtaacccccccataaataccaaacctacgctcccaaagaggagatgacctatattcactacctactactctga |
49764483 |
T |
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| Q |
201 |
ctctcgaaaagcacactgctactagggttagagctattgtactcggttcaagtacaagaagttgggaggagcatggaggattt |
283 |
Q |
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| T |
49764484 |
ctctcgaaaagcacactgctactagggttagagctattgtactcggttcaagtacaagaagttgggaggagcatggaggattt |
49764566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 171 - 257
Target Start/End: Original strand, 21272482 - 21272568
Alignment:
| Q |
171 |
atgacctatattcactacctactactctgactctcgaaaagcacactgctactagggttagagctattgtactcggttcaagtacaa |
257 |
Q |
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| T |
21272482 |
atgacctatattcacaacctattactctgactctgaaaaagcacattgttaatagggttagagctattgtactcaattcaaatacaa |
21272568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 10325413 - 10325329
Alignment:
| Q |
172 |
tgacctatattcactacctactactctgactctcgaaaagcacactgctactagggttagagctattgtactcggttcaagtaca |
256 |
Q |
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| T |
10325413 |
tgacctaaattcactacctatcactctgactctgaaaaagcacaccgcagtcagggttagagctattatacttcgttcaagtaca |
10325329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 1622507 - 1622554
Alignment:
| Q |
195 |
ctctgactctcgaaaagcacactgctactagggttagagctattgtac |
242 |
Q |
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| T |
1622507 |
ctctgactctagaaaagcacactgctgctagggttggaactattgtac |
1622554 |
T |
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