View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14845_low_1 (Length: 426)
Name: NF14845_low_1
Description: NF14845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14845_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Original strand, 36562613 - 36563020
Alignment:
| Q |
1 |
catcacagcctcttcattccgcgagctcttcaaaacctcattaagctgttgcaactcaagtccaagattggaaatcttgacgtcctgagtactattcaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36562613 |
catcacagcctcttcattccgcgagctcttcaaaacctcattaagctgctgcaactcaagtccaagattggaaatcttgacgtcctgagtactattcaca |
36562712 |
T |
|
| Q |
101 |
ccctcagcatcattcttctccttcaccaccaaatcaatcttctccttcaactcatcaatcaccttcatcgactcaatcgacttcttcacagccaaatccc |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
36562713 |
ccctcagcatcattcttctccttcaccaccaaatcaatcttctccttcaactcatcaatcaccttcaccgactcaatcgacttcttcacagccaaatccc |
36562812 |
T |
|
| Q |
201 |
tatccttctcaagctcctcaaccttactttctctctcagccttttcatcaaacagtttccgtgcatcccacctcatcttctcaacattcctcttctcact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
36562813 |
tatccttctcaagctcctcaaccttactttctctctcagccttttcatcaaacagtttccgtgcatccaacctcatcttctcaacattcctctcctcact |
36562912 |
T |
|
| Q |
301 |
ctctagacataacccgaaatccttcatcttctccctttgaacaggaaccgcatacgcaagctcatttttctcttcaacgatcttttcaaagagaaaccct |
400 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| |||| ||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
36562913 |
ctctagacataaccctaaatccttcatcttctccctttgaacagaaacctcatactcaatctcatttttctcttcaacgatcttttcaaagagaaaccct |
36563012 |
T |
|
| Q |
401 |
aattcagt |
408 |
Q |
| |
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|||||||| |
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|
| T |
36563013 |
aattcagt |
36563020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 114 - 207
Target Start/End: Complemental strand, 952176 - 952083
Alignment:
| Q |
114 |
tcttctccttcaccaccaaatcaatcttctccttcaactcatcaatcaccttcatcgactcaatcgacttcttcacagccaaatccctatcctt |
207 |
Q |
| |
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||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||| |||| | |||| |||||| || ||||| ||||||| |
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| T |
952176 |
tcttctcatacaccaccaaaacaatcttctccttcaactcatcaatcaccttcatcgattcaaacaacttattcacaacctaatccttatcctt |
952083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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