View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14845_low_10 (Length: 219)

Name: NF14845_low_10
Description: NF14845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14845_low_10
NF14845_low_10
[»] chr6 (7 HSPs)
chr6 (21-123)||(27532632-27532734)
chr6 (28-101)||(26801547-26801620)
chr6 (26-121)||(27594081-27594177)
chr6 (84-129)||(27666988-27667033)
chr6 (188-219)||(26802129-26802160)
chr6 (188-219)||(28785985-28786016)
chr6 (188-216)||(27725324-27725352)
[»] scaffold0349 (1 HSPs)
scaffold0349 (188-216)||(3901-3929)


Alignment Details
Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 123
Target Start/End: Original strand, 27532632 - 27532734
Alignment:
Q  21 aaaataaaggtaaatatttatgtctccttaaatttggtagaatgctataacgtataagcagcacatctagttgaatgctaaaactaaagcatccttttta 120  Q
    |||| ||||||||| || |||||||||||||||| |||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||| ||||||    
T  27532632 aaaaaaaaggtaaaaatgtatgtctccttaaattgggtagaatgctataacctataagtagcccatctagttgaatgctaaaactaaagcatcattttta 27532731  T
Q  121 aca 123  Q
    |||    
T  27532732 aca 27532734  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 26801620 - 26801547
Alignment:
Q  28 aggtaaatatttatgtctccttaaatttggtagaatgctataacgtataagcagcacatctagttgaatgctaa 101  Q
    |||||||| ||| |||||||||||||| |||||||||||||||| |||||| |||  |||||||||||| ||||    
T  26801620 aggtaaatttttttgtctccttaaattgggtagaatgctataacctataaggagcctatctagttgaatcctaa 26801547  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 121
Target Start/End: Original strand, 27594081 - 27594177
Alignment:
Q  26 aaaggtaaatatttatgtctcctta-aatttggtagaatgctataacgtataagcagcacatctagttgaatgctaaaactaaagcatcctttttaa 121  Q
    ||||||||| | ||||||||||||  |||| ||||||||||| |||| |||||| |||  ||||||||||||||| |||||| |||||| |||||||    
T  27594081 aaaggtaaaaaattatgtctccttgtaattgggtagaatgctgtaacctataagtagccaatctagttgaatgctgaaactatagcatcatttttaa 27594177  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 129
Target Start/End: Original strand, 27666988 - 27667033
Alignment:
Q  84 catctagttgaatgctaaaactaaagcatcctttttaacaaacttt 129  Q
    ||||||||||||||||||||| |||||||| ||||||||| |||||    
T  27666988 catctagttgaatgctaaaaccaaagcatcatttttaacatacttt 27667033  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 219
Target Start/End: Complemental strand, 26802160 - 26802129
Alignment:
Q  188 cttcctggccacttcctatagccgtgtggacc 219  Q
    ||||||||||||||||||||||||||||||||    
T  26802160 cttcctggccacttcctatagccgtgtggacc 26802129  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 219
Target Start/End: Complemental strand, 28786016 - 28785985
Alignment:
Q  188 cttcctggccacttcctatagccgtgtggacc 219  Q
    ||||||||||||||||||||||||||||||||    
T  28786016 cttcctggccacttcctatagccgtgtggacc 28785985  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 216
Target Start/End: Original strand, 27725324 - 27725352
Alignment:
Q  188 cttcctggccacttcctatagccgtgtgg 216  Q
    |||||||||||||||||||||||||||||    
T  27725324 cttcctggccacttcctatagccgtgtgg 27725352  T

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Target: scaffold0349 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 216
Target Start/End: Original strand, 3901 - 3929
Alignment:
Q  188 cttcctggccacttcctatagccgtgtgg 216  Q
    |||||||||||||||||||||||||||||    
T  3901 cttcctggccacttcctatagccgtgtgg 3929  T

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