View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14845_low_11 (Length: 205)
Name: NF14845_low_11
Description: NF14845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14845_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 1007531 - 1007339
Alignment:
| Q |
1 |
gcttccaacttcaatgactttgtcataatgtcagctagttgatcttgtgagttgcaatgcttcaattccatgatttcatcttta----gttaagtctctt |
96 |
Q |
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| T |
1007531 |
gcttccaacttcaatggctttgtcataatgtcagctagttgatcttgtgagttgcaatgcttcaattccatgattccatctttaattagttaagtctctt |
1007432 |
T |
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| Q |
97 |
aggtagtgaaacctgacatctatatgtctgcatctaccatgcatgactggattcttacatagctttattgatgagctattatcacagtatatt |
189 |
Q |
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| T |
1007431 |
aggtagtgaaacctgacatctatatgtttgtatctaccatgcatgattggattcttagatagctttattgatgagctattatcacagtatatt |
1007339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 52 - 182
Target Start/End: Complemental strand, 16866547 - 16866417
Alignment:
| Q |
52 |
ttgcaatgcttcaattccatgatttcatctttagttaagtctcttaggtagtgaaacctgacatctatatgtctgcatctaccatgcatgactggattct |
151 |
Q |
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| T |
16866547 |
ttgcagtgcttcgattctataattccatctttagctaagtccctcaagaagtgaaacctgagatctatgtgtttgcatcttccatgcatgactggattct |
16866448 |
T |
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| Q |
152 |
tacatagctttattgatgagctattatcaca |
182 |
Q |
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| T |
16866447 |
tagatagctttattgatgagctattatcaca |
16866417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 40609754 - 40609942
Alignment:
| Q |
1 |
gcttccaacttcaatgactttgtcataatgtcagctagttgatcttgtgagttgcaatgcttcaattccatgatttcatctttagttaagtctcttaggt |
100 |
Q |
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| T |
40609754 |
gcttccaacttcagtggctttgtcataatgccagctagttgatcttgtgagttgcaatgcttcaattccatgattccatctttagttaagtctctttgga |
40609853 |
T |
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| Q |
101 |
agtgaaacctgacatctatatgtctgcatctaccatgcatgactggattcttacatagctttattgatgagctattatcacagtatatt |
189 |
Q |
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| T |
40609854 |
agtgaaaagtgacatctatatgtttgcatctaccatgcatgactggattcttagatagctttattgatgagctattatcacagtatatt |
40609942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 2084038 - 2083916
Alignment:
| Q |
18 |
ctttgtcataatgtcagctagttgatcttgtgagttgcaatgcttcaattccatgatttcatctttagttaagtctcttaggtagtgaaacctgacatct |
117 |
Q |
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| T |
2084038 |
ctttatcataatgtcaaccaattgatcttgtgaattgcaatgcatgagctccatgattccatctttagtcaagtccctcagaaagtgaaatctcacagct |
2083939 |
T |
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| Q |
118 |
atatgtctgcatctaccatgcat |
140 |
Q |
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|| || ||||||| |||||||| |
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| T |
2083938 |
atgtgcttgcatcttccatgcat |
2083916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 149; Significance: 7e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 20545563 - 20545375
Alignment:
| Q |
1 |
gcttccaacttcaatgactttgtcataatgtcagctagttgatcttgtgagttgcaatgcttcaattccatgatttcatctttagttaagtctcttaggt |
100 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
20545563 |
gcttccaacttcggtggctttgtcataatgtcagctagttgatcttgtgagttgcaaagcttcaattccatgattccatctttagttaagtctcttagga |
20545464 |
T |
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| Q |
101 |
agtgaaacctgacatctatatgtctgcatctaccatgcatgactggattcttacatagctttattgatgagctattatcacagtatatt |
189 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |
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| T |
20545463 |
agtgaaacctgacatctatatgtttgcatctaccatgcatgactggattcttagatagctttattgatgagctattgtcaaagtatatt |
20545375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 50495253 - 50495180
Alignment:
| Q |
109 |
ctgacatctatatgtctgcatctaccatgcatgactggattcttacatagctttattgatgagctattatcaca |
182 |
Q |
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||||||||||||||| ||||||| |||||||| | |||||||||| | ||||| || |||| | |||||||||| |
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| T |
50495253 |
ctgacatctatatgtttgcatcttccatgcataattggattcttatagagcttaatagatgtgttattatcaca |
50495180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 47144867 - 47144703
Alignment:
| Q |
18 |
ctttgtcataatgtcagctagttgatcttgtgagttgcaatgcttcaattccatgatttcatctttagttaagtctcttaggtagtgaaacctgacatct |
117 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||| ||||||| |||||| ||| |||||||| ||||||||||| | | |||||||| |||||| |
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| T |
47144867 |
ctttgtcataatgtcagccaattgatcttgtgagttgcagtgcttcagttccataattccatctttaactaagtctcttaagaaatgaaacctcacatct |
47144768 |
T |
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| Q |
118 |
atatgtctgcatctaccatgcatgactggattcttacatagctttattgatgagctattatcaca |
182 |
Q |
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||||| ||||||| |||||||| |||||||||||| |||||||||||||||||||||| ||||| |
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| T |
47144767 |
atatgcttgcatctcccatgcataactggattcttagatagctttattgatgagctattgtcaca |
47144703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 188
Target Start/End: Complemental strand, 20532241 - 20532075
Alignment:
| Q |
22 |
gtcataatgtcagctagttgatcttgtgagttgcaatgcttcaattccatgatttcatctttagttaagtctcttaggtagtgaaacctgacatctatat |
121 |
Q |
| |
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|||||||||||| | | |||||||||||||||||||||||| | |||||||| | |||||| | |||||| || | | ||||| || |||| ||| | |
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| T |
20532241 |
gtcataatgtcaaccaattgatcttgtgagttgcaatgctttagttccatgactccatcttggggtaagtccctaaaaaaatgaaatctcacatttatgt |
20532142 |
T |
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| Q |
122 |
gtctgcatctaccatgcatgactggattcttacatagctttattgatgagctattatcacagtatat |
188 |
Q |
| |
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| T |
20532141 |
gcttgcatcttccatgcatgataggattcctagatagtttaatagatgaactattgtcacaatatat |
20532075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 171
Target Start/End: Original strand, 45229787 - 45229920
Alignment:
| Q |
38 |
gttgatcttgtgagttgcaatgcttcaattccatgatttcatctttagttaagtctcttaggtagtgaaacctgacatctatatgtctgcatctaccatg |
137 |
Q |
| |
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||||||||||||| |||||||| |||| ||||| | | ||||||| || || || || | | ||||||| ||||||||| || ||||||| ||||| |
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| T |
45229787 |
gttgatcttgtgaattgcaatgtttcagctccataactccatctttggtcaaatccctcaaaaaatgaaaccagacatctatgtgcttgcatcttccatg |
45229886 |
T |
|
| Q |
138 |
catgactggattcttacatagctttattgatgag |
171 |
Q |
| |
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||| |||||||||||| | | ||| ||||||||| |
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| T |
45229887 |
cataactggattcttagacaacttaattgatgag |
45229920 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 5144009 - 5144062
Alignment:
| Q |
18 |
ctttgtcataatgtcagctagttgatcttgtgagttgcaatgcttcaattccat |
71 |
Q |
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|||||||| ||||||| | | |||||||||||| |||||||||||||| ||||| |
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| T |
5144009 |
ctttgtcacaatgtcatccaattgatcttgtgaattgcaatgcttcaactccat |
5144062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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