View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14845_low_2 (Length: 415)
Name: NF14845_low_2
Description: NF14845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14845_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 96; Significance: 6e-47; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 252 - 399
Target Start/End: Complemental strand, 6568347 - 6568200
Alignment:
| Q |
252 |
taaaaataagtcatcaagtccagaacagtttcataaactactttctgtagggattcaaaccaatgttgttatttgtgttctgctaacttctgtaaagcaa |
351 |
Q |
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| T |
6568347 |
taaaaataagccatcaagtctagaacagtttcataaactactttttgtagggattcaaaccattgttgttatttttgtgctagtaacttctgtaaagcaa |
6568248 |
T |
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| Q |
352 |
aggataaacaacaattcggtttttactgctatgttgtgttgttttcat |
399 |
Q |
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| T |
6568247 |
aggaacaacaaccctttggtttttactgctatgttgtgttgttttcat |
6568200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 284 - 399
Target Start/End: Complemental strand, 6598515 - 6598400
Alignment:
| Q |
284 |
ataaactactttctgtagggattcaaaccaatgttgttatttgtgttctgctaacttctgtaaagcaaaggataaacaacaattcggtttttactgctat |
383 |
Q |
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| T |
6598515 |
ataagctactttttgtagggatccaaaccattgttgttaattttgttctagtaacttctgtaaagcaaaggaacaacaacccttcggtttttactgctat |
6598416 |
T |
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| Q |
384 |
gttgtgttgttttcat |
399 |
Q |
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| T |
6598415 |
gttgtgttgttttcat |
6598400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 284 - 396
Target Start/End: Complemental strand, 6653189 - 6653077
Alignment:
| Q |
284 |
ataaactactttctgtagggattcaaaccaatgttgttatttgtgttctgctaacttctgtaaagcaaaggataaacaacaattcggtttttactgctat |
383 |
Q |
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| T |
6653189 |
ataagctactttttgtagggatttaaaccattgttgttaattttgttctagtaacctctgtaaagcaaaggaacaacaacccttcggtttttactgctat |
6653090 |
T |
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| Q |
384 |
gttgtgttgtttt |
396 |
Q |
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| T |
6653089 |
gttgtcttgtttt |
6653077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 284 - 396
Target Start/End: Complemental strand, 6733589 - 6733477
Alignment:
| Q |
284 |
ataaactactttctgtagggattcaaaccaatgttgttatttgtgttctgctaacttctgtaaagcaaaggataaacaacaattcggtttttactgctat |
383 |
Q |
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| T |
6733589 |
ataagctactttttgtagggatttaaaccattgttgttaattttgttctagtaacctctgtaaagcaaaggaacaacaacccttcggtttttactgctat |
6733490 |
T |
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| Q |
384 |
gttgtgttgtttt |
396 |
Q |
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| T |
6733489 |
gttgtcttgtttt |
6733477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 6599385 - 6599334
Alignment:
| Q |
15 |
agatgaaactcatgtctgatatcaaaattgtatagcaaccaacaaagataat |
66 |
Q |
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| T |
6599385 |
agatgaaactcatctctcatatcaaaattgtatagcaacaaacagagataat |
6599334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 6674838 - 6674787
Alignment:
| Q |
15 |
agatgaaactcatgtctgatatcaaaattgtatagcaaccaacaaagataat |
66 |
Q |
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| T |
6674838 |
agatgaaactcatctctcatatcaaaattgtatagcaacaaacagagataat |
6674787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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