View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14845_low_3 (Length: 380)
Name: NF14845_low_3
Description: NF14845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14845_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 36246208 - 36246571
Alignment:
| Q |
1 |
tgtttgagttgcaggattacaaagatgtggaaagagttgtcgtctacgttggacaaactatctccaaccggatataaagagaggacgattctcttttgaa |
100 |
Q |
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| T |
36246208 |
tgtttgagttgcaggattacaaagatgtggaaagagttgtcgtctacgttggacaaactatctccgaccggatataaagagaggacgattctcttttgaa |
36246307 |
T |
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| Q |
101 |
gaagaagaaaccataattcagctgcatagcatacttggcaacaagtaataataattaagtctctcagtatataaattttaatcaatttatctacatgtgt |
200 |
Q |
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| T |
36246308 |
gaagaagaaaccataattcagctgcatagcatacttggcaacaagtaataataattaagtctctcagtatataaattttaatcaatttatctacatgtgt |
36246407 |
T |
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| Q |
201 |
aacagtgagttaaatacatattaattttcattatgattaagatactatatacgacagaataatagatatgatttttgtgactaaactacatagttttgaa |
300 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36246408 |
aacaatgagttaaatacatattaattttcattatgattaagacactatatacgacagaataatagatatgatttttgtgactaaactacatagttttgaa |
36246507 |
T |
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| Q |
301 |
ttgtgtaggtggtcttcaattgcttctaggctaccaggaagaacagacaatgaaatcaagaatt |
364 |
Q |
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| T |
36246508 |
ttgtgtaggtggtcttcaattgcttctaggctaccaggaagaacagacaatgaaatcaagaatt |
36246571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 2892568 - 2892440
Alignment:
| Q |
20 |
caaagatgtggaaagagttgtcgtctacgttggacaaactatctccaaccggatataaagagaggacgattctcttttgaagaagaagaaaccataattc |
119 |
Q |
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| T |
2892568 |
caaagatgtggcaaaagttgtcgtctccgttggacaaactatctccgaccagatataaaacgtggtcggttttcatttgaagaggaagagacaattattc |
2892469 |
T |
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| Q |
120 |
agctgcatagcatacttggcaacaagtaa |
148 |
Q |
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| T |
2892468 |
agctacatagcattcttggcaacaagtaa |
2892440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 37881920 - 37881832
Alignment:
| Q |
20 |
caaagatgtggaaagagttgtcgtctacgttggacaaactatctccaaccggatataaagagaggacgattctcttttgaagaagaaga |
108 |
Q |
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| T |
37881920 |
caaaggtgtggtaagagttgtcgtcttcgatggacaaactatttgagacctgatatcaagagaggaaggttctcctttgaagaagaaga |
37881832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 327 - 362
Target Start/End: Complemental strand, 27632624 - 27632589
Alignment:
| Q |
327 |
taggctaccaggaagaacagacaatgaaatcaagaa |
362 |
Q |
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|||||| ||||||||||||||||||||||||||||| |
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| T |
27632624 |
taggcttccaggaagaacagacaatgaaatcaagaa |
27632589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 332 - 364
Target Start/End: Complemental strand, 17118285 - 17118253
Alignment:
| Q |
332 |
taccaggaagaacagacaatgaaatcaagaatt |
364 |
Q |
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| T |
17118285 |
taccaggaagaacagacaatgaaataaagaatt |
17118253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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