View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14845_low_4 (Length: 358)
Name: NF14845_low_4
Description: NF14845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14845_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 349
Target Start/End: Complemental strand, 35677314 - 35676983
Alignment:
| Q |
18 |
acatggccatcagatctactaccaatgatgtgctcatcaataactttttcaaaaaatgcatccatatgtttggctactttttctgccttactataaaaac |
117 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35677314 |
acatggccatcagatcgactaccaatgatgtgctcatcaataactttttcaaaaaatgcatccatatgtttggctactttttctgccttactataaaaac |
35677215 |
T |
|
| Q |
118 |
cattaaccttacccaaccaattaagtgaaggtatgtaatctcctataaagaaaataactaataactctccaaactccaacattagctccggaagaactcc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35677214 |
cattaaccttacccaaccaattaagtgaaggtatgtaatctcctataaagaaaataactaataactctccaaactccaacattagctccggaagaactcc |
35677115 |
T |
|
| Q |
218 |
accttcatcacggtatcttttgcctagaaccaccctgcatgttatatcattagtaactgtagaacacaactctgttaaattcacacaagtattcttctgt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35677114 |
accttcatcacggtatcttttgcctagaaccaccctgcatgttatatcattagtaactgtagaacacaactctgttaaattcacacaagtattcttctgt |
35677015 |
T |
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| Q |
318 |
tgaatacttagcatcatttttgcagtttcttc |
349 |
Q |
| |
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||||||||||||||||||||||||| |||||| |
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| T |
35677014 |
tgaatacttagcatcatttttgcagattcttc |
35676983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 18 - 349
Target Start/End: Complemental strand, 35641898 - 35641567
Alignment:
| Q |
18 |
acatggccatcagatctactaccaatgatgtgctcatcaataactttttcaaaaaatgcatccatatgtttggctactttttctgccttactataaaaac |
117 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||| ||||||||||| ||||||||| |||||| |||||| || |||||||||||||| ||||| |||| |
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| T |
35641898 |
acatgtccatcagatctactaccactgatgtgctcctcaataactttctcaaaaaattcatccaaatgtttagccactttttctgccttgctatagaaac |
35641799 |
T |
|
| Q |
118 |
cattaaccttacccaaccaattaagtgaaggtatgtaatctcctataaagaaaataactaataactctccaaactccaacattagctccggaagaactcc |
217 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| ||||||||||||||||| | | || |||||||||||||||||||| |||||||| | || || |
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| T |
35641798 |
cattaaccttacccaaccatttaagccaaggtatataatctcctataaagaatgaacccaacaactctccaaactccaacatcagctccggcaatacccc |
35641699 |
T |
|
| Q |
218 |
accttcatcacggtatcttttgcctagaaccaccctgcatgttatatcattagtaactgtagaacacaactctgttaaattcacacaagtattcttctgt |
317 |
Q |
| |
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||||| |||| |||||||| |||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35641698 |
acctttttcaccatatctttttcctagagccaccctacatgttatatcattagtaattgtagaacacaactctgttaaattcacacaagtattcttctgt |
35641599 |
T |
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| Q |
318 |
tgaatacttagcatcatttttgcagtttcttc |
349 |
Q |
| |
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||||||||| |||||||||||||||||||||| |
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| T |
35641598 |
tgaatactttgcatcatttttgcagtttcttc |
35641567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 35649234 - 35649043
Alignment:
| Q |
18 |
acatggccatcagatctactaccaatgatgtgctcatcaataactttttcaaaaaatgcatccatatgtttggctactttttctgccttactataaaaac |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35649234 |
acatggccatcagatcgactaccaatgatgtgctcatcaataactttttcaaaaaatgcatccatatgtttggctactttttctgccttactataaaaac |
35649135 |
T |
|
| Q |
118 |
cattaaccttacccaaccaattaagtgaaggtatgtaatctcctataaagaaaataactaataactctccaaactccaacattagctccgga |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35649134 |
cattaaccttacccaaccaattaagtgaaggtatgtaatctcctataaagaaaataactaataactctccaaactccaacattagctccgga |
35649043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 292
Target Start/End: Complemental strand, 35656222 - 35655972
Alignment:
| Q |
45 |
atgtgctcatcaataactttttcaaaaaatgcatccatatgtttggctactttttctgccttactataaaaaccattaaccttacccaaccaattaagtg |
144 |
Q |
| |
|
|||||||| ||||| |||| ||||||||| |||||| |||||||| ||||||||||| || ||||||||||||||||| || |||||||||| ||| |
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| T |
35656222 |
atgtgctcctcaatgacttcctcaaaaaattcatccaattgtttggccactttttctgctttgctataaaaaccattaacttttcccaaccaatcaagcc |
35656123 |
T |
|
| Q |
145 |
aaggtatgtaatctcctataaagaaaataactaataactctccaaactccaacattagctccggaa---gaactccaccttcatcacggtatcttttgcc |
241 |
Q |
| |
|
||||||| || ||||||||| | | | || | | ||||| ||||| ||||||| | |||| ||| | || | | | |||||||||||||| || |
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| T |
35656122 |
aaggtatatagtctcctatacatacagtacccagcaactccccaaattccaacaacacctcctgaaatttcatccctcttccttcacggtatctttttcc |
35656023 |
T |
|
| Q |
242 |
tagaaccaccctgcatgttatatcattagtaactgtagaacacaactctgt |
292 |
Q |
| |
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||| ||||||||||| |||||||||||||| |||||| ||||||||||| |
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| T |
35656022 |
cagagccaccctgcatactatatcattagtaattgtagagcacaactctgt |
35655972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 198
Target Start/End: Complemental strand, 35646750 - 35646647
Alignment:
| Q |
95 |
tttttctgccttactataaaaaccattaaccttacccaaccaattaagtgaaggtatgtaatctcctataaagaaaataactaataactctccaaactcc |
194 |
Q |
| |
|
|||||||||||| | ||||| |||||| || || |||||||||| ||| | ||||| |||||||||||| | | | || |||||||||||||||||||| |
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| T |
35646750 |
tttttctgccttgccataaagaccatttacttttcccaaccaatcaagccatggtatataatctcctatacatacagtacctaataactctccaaactcc |
35646651 |
T |
|
| Q |
195 |
aaca |
198 |
Q |
| |
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|||| |
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|
| T |
35646650 |
aaca |
35646647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 300
Target Start/End: Complemental strand, 35646617 - 35646542
Alignment:
| Q |
225 |
tcacggtatcttttgcctagaaccaccctgcatgttatatcattagtaactgtagaacacaactctgttaaattca |
300 |
Q |
| |
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||||||||| |||| || || |||||||||||| |||||||||||||| ||||| ||||||||| ||||||||| |
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| T |
35646617 |
tcacggtatgtttttccaagtgccaccctgcatgctatatcattagtaattgtagcacacaactcacttaaattca |
35646542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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