View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14845_low_5 (Length: 333)
Name: NF14845_low_5
Description: NF14845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14845_low_5 |
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| [»] chr4 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 17 - 333
Target Start/End: Complemental strand, 49297275 - 49296955
Alignment:
| Q |
17 |
taaacaatatacttgaatccacctgctgcacattattgcagcaaaggtagaagatccttgtccttaagtggcaccccaaatctatcaattaagttagact |
116 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49297275 |
taaacaatagacttgaatccacctgctgcacattattgcagcaaaggtagaagatccttgtccttaagtggcaccccaaatctatcaattaagttagact |
49297176 |
T |
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| Q |
117 |
aattaattatacctagtgccataatctctaagattaactcaacattgcctctctatataatatataaccaaaaaaggtcaacttattattattaagtaga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
49297175 |
aattaattatacctagtgccataatctctaagattaactcaacattgcctctctatat-atatataaccaaaaaaggtcaacttattattattaagtaga |
49297077 |
T |
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| Q |
217 |
tttgtgtgagc---ctggtgagattaaagccaaagagcaccagc--ttttaagcattggaattaaggaacggttaagatgaagactcataacttgattgg |
311 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49297076 |
tttgtgtgagcctgctggtgagattaaagccaaagagcaccagcttttttaagcattggaattaaggaacggttaagatgaagactcataacttgattgg |
49296977 |
T |
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| Q |
312 |
ctccaccaacaagctcaccacc |
333 |
Q |
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|||||||||||||||||||||| |
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| T |
49296976 |
ctccaccaacaagctcaccacc |
49296955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 17 - 333
Target Start/End: Complemental strand, 49290324 - 49290004
Alignment:
| Q |
17 |
taaacaatatacttgaatccacctgctgcacattattgcagcaaaggtagaagatccttgtccttaagtggcaccccaaatctatcaattaagttagact |
116 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49290324 |
taaacaatagacttgaatccacctgctgcacattattgcagcaaaggtagaagatccttgtccttaagtggcaccccaaatctatcaattaagttagact |
49290225 |
T |
|
| Q |
117 |
aattaattatacctagtgccataatctctaagattaactcaacattgcctctctatataatatataaccaaaaaaggtcaacttattattattaagtaga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
49290224 |
aattaattatacctagtgccataatctctaagattaactcaacattgcctctctctat-atatataaccaaaaaaggtcaacttattattattaagtaga |
49290126 |
T |
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| Q |
217 |
tttgtgtgagc---ctggtgagattaaagccaaagagcaccagc--ttttaagcattggaattaaggaacggttaagatgaagactcataacttgattgg |
311 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49290125 |
tttgtgtgagcctgctggtgagattaaagccaaagagcaccagcttttttaagcattggaattaaggaacggttaagatgaagactcataacttgattgg |
49290026 |
T |
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| Q |
312 |
ctccaccaacaagctcaccacc |
333 |
Q |
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|||||||||||||||||||||| |
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| T |
49290025 |
ctccaccaacaagctcaccacc |
49290004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 232 - 333
Target Start/End: Complemental strand, 49303788 - 49303685
Alignment:
| Q |
232 |
tgagattaaagccaaagagcaccagctttt--aagcattggaattaaggaacggttaagatgaagactcataacttgattggctccaccaacaagctcac |
329 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49303788 |
tgagattaaagccaaagagcaccagcttttttaagcattggaattaaggaacggttaagatgaagactcataacttgattggctccaccaacaagctcac |
49303689 |
T |
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| Q |
330 |
cacc |
333 |
Q |
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|||| |
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| T |
49303688 |
cacc |
49303685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 333
Target Start/End: Original strand, 6567878 - 6567927
Alignment:
| Q |
284 |
ttaagatgaagactcataacttgattggctccaccaacaagctcaccacc |
333 |
Q |
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||||| ||||| |||||||||| ||| ||||||||||||||||||||||| |
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| T |
6567878 |
ttaaggtgaaggctcataacttcattagctccaccaacaagctcaccacc |
6567927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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