View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14845_low_6 (Length: 317)
Name: NF14845_low_6
Description: NF14845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14845_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 26 - 162
Target Start/End: Original strand, 41905590 - 41905726
Alignment:
| Q |
26 |
gatcatccacattggaccaataacgatcacacaaagaaaatttgacacaacatcttaactaatattatgttgcttaacattcactactatcaccggatca |
125 |
Q |
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| T |
41905590 |
gatcatccacattggatcaataacgatcacacaaagaaaatttgacacaacatcttaactaataatatgttgcttatcattcactactatcaccggatca |
41905689 |
T |
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| Q |
126 |
caagaggtacccatagaatcattcacatttgaccaat |
162 |
Q |
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| T |
41905690 |
caagagctacccatagaatcattcacatttgaccaat |
41905726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 189 - 306
Target Start/End: Original strand, 41905750 - 41905867
Alignment:
| Q |
189 |
atatcacatttttatcaaaaatattcaggtattggattaatcgaccatatctttgatatgttgttcaagattcaatttttcatgcaaagtgtgacttacc |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
41905750 |
atatcacatttttatcaaaaatattcaggtattggattaatcgaccatatctttgatatgttgtttaagattcaatttttcatgcaaagtgtgacttacc |
41905849 |
T |
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| Q |
289 |
tcccatttgctacacaat |
306 |
Q |
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| T |
41905850 |
tcccatttgctacacaat |
41905867 |
T |
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