View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14846_high_3 (Length: 253)

Name: NF14846_high_3
Description: NF14846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14846_high_3
NF14846_high_3
[»] chr2 (5 HSPs)
chr2 (13-240)||(3349494-3349721)
chr2 (57-240)||(3374899-3375082)
chr2 (13-48)||(2289613-2289648)
chr2 (13-48)||(41566765-41566800)
chr2 (16-48)||(40864402-40864434)
[»] chr8 (3 HSPs)
chr8 (13-48)||(28420456-28420491)
chr8 (15-48)||(39974844-39974877)
chr8 (15-48)||(41625194-41625227)
[»] chr7 (2 HSPs)
chr7 (13-48)||(24061361-24061396)
chr7 (13-48)||(34267583-34267618)
[»] chr5 (2 HSPs)
chr5 (13-48)||(17666009-17666044)
chr5 (13-45)||(10404133-10404165)
[»] chr4 (2 HSPs)
chr4 (13-48)||(46998400-46998435)
chr4 (13-47)||(50512364-50512398)
[»] chr3 (2 HSPs)
chr3 (13-48)||(54021366-54021401)
chr3 (16-48)||(52575466-52575498)
[»] chr1 (4 HSPs)
chr1 (13-48)||(18551665-18551700)
chr1 (13-47)||(46161155-46161189)
chr1 (16-48)||(25034907-25034939)
chr1 (13-45)||(31762176-31762208)
[»] chr6 (2 HSPs)
chr6 (16-48)||(10517202-10517234)
chr6 (16-48)||(31705902-31705934)


Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 13 - 240
Target Start/End: Complemental strand, 3349721 - 3349494
Alignment:
Q  13 aatatgcaatattcataccaactgagctaagctcacnnnnnnnnattaacatggttatgatttattgaatttgtaggacgttcatttatacatgcaaatg 112  Q
    ||||||||||||| ||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3349721 aatatgcaatatttataccaactgagctaagctcacttttttttattaacatggttatgatttattgaatttgtaggacgttcatttatacatgcaaatg 3349622  T
Q  113 ctgataagctgttgaatgaagtgaaagacgattgccctcgttggttagctattgttcttcctgctatgattgaacttgctgatgaaatcatgggtttaga 212  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3349621 ctgataagctgctgaatgaagtgaaagacgattgccctcgttggttagctattgttcttcctgctatgattgaacttgctgatgaaatcatgggtttaga 3349522  T
Q  213 tgtgctcttcacaaagtcatcaagggac 240  Q
    ||||||||||||||||||||||||||||    
T  3349521 tgtgctcttcacaaagtcatcaagggac 3349494  T

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Target: chr2; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 57 - 240
Target Start/End: Complemental strand, 3375082 - 3374899
Alignment:
Q  57 attaacatggttatgatttattgaatttgtaggacgttcatttatacatgcaaatgctgataagctgttgaatgaagtgaaagacgattgccctcgttgg 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3375082 attaacatggttatgatttattgaatttgtaggacgttcatttatacatgcaaatgctgataagctgctgaatgaagtgaaagacgattgccctcgttgg 3374983  T
Q  157 ttagctattgttcttcctgctatgattgaacttgctgatgaaatcatgggtttagatgtgctcttcacaaagtcatcaagggac 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3374982 ttagctattgttcttcctgctatgattgaacttgctgatgaaatcatgggtttagatgtgctcttcacaaagtcatcaagggac 3374899  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 48
Target Start/End: Complemental strand, 2289648 - 2289613
Alignment:
Q  13 aatatgcaatattcataccaactgagctaagctcac 48  Q
    |||||||||||||| |||||||||||||||||||||    
T  2289648 aatatgcaatattcctaccaactgagctaagctcac 2289613  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 48
Target Start/End: Complemental strand, 41566800 - 41566765
Alignment:
Q  13 aatatgcaatattcataccaactgagctaagctcac 48  Q
    |||||||||||||| |||||||||||||||||||||    
T  41566800 aatatgcaatattcctaccaactgagctaagctcac 41566765  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 40864434 - 40864402
Alignment:
Q  16 atgcaatattcataccaactgagctaagctcac 48  Q
    ||||||||||| |||||||||||||||||||||    
T  40864434 atgcaatattcctaccaactgagctaagctcac 40864402  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 28420456 - 28420491
Alignment:
Q  13 aatatgcaatattcataccaactgagctaagctcac 48  Q
    |||||||||||||| |||||||||||||||||||||    
T  28420456 aatatgcaatattcctaccaactgagctaagctcac 28420491  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 39974877 - 39974844
Alignment:
Q  15 tatgcaatattcataccaactgagctaagctcac 48  Q
    |||||||||||| |||||||||||||||||||||    
T  39974877 tatgcaatattcctaccaactgagctaagctcac 39974844  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 41625227 - 41625194
Alignment:
Q  15 tatgcaatattcataccaactgagctaagctcac 48  Q
    |||||| |||||||||||||||||||||||||||    
T  41625227 tatgcattattcataccaactgagctaagctcac 41625194  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 24061361 - 24061396
Alignment:
Q  13 aatatgcaatattcataccaactgagctaagctcac 48  Q
    |||||||||||||| |||||||||||||||||||||    
T  24061361 aatatgcaatattcctaccaactgagctaagctcac 24061396  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 34267583 - 34267618
Alignment:
Q  13 aatatgcaatattcataccaactgagctaagctcac 48  Q
    |||||||||||||| |||||||||||||||||||||    
T  34267583 aatatgcaatattcctaccaactgagctaagctcac 34267618  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 48
Target Start/End: Complemental strand, 17666044 - 17666009
Alignment:
Q  13 aatatgcaatattcataccaactgagctaagctcac 48  Q
    |||||||||||||| |||||||||||||||||||||    
T  17666044 aatatgcaatattcctaccaactgagctaagctcac 17666009  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 10404165 - 10404133
Alignment:
Q  13 aatatgcaatattcataccaactgagctaagct 45  Q
    |||||||||||||| ||||||||||||||||||    
T  10404165 aatatgcaatattcctaccaactgagctaagct 10404133  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 46998400 - 46998435
Alignment:
Q  13 aatatgcaatattcataccaactgagctaagctcac 48  Q
    ||||| ||||||||||||||||||||||||||||||    
T  46998400 aatatacaatattcataccaactgagctaagctcac 46998435  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 50512398 - 50512364
Alignment:
Q  13 aatatgcaatattcataccaactgagctaagctca 47  Q
    |||||||||||||| ||||||||||||||||||||    
T  50512398 aatatgcaatattcctaccaactgagctaagctca 50512364  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 54021366 - 54021401
Alignment:
Q  13 aatatgcaatattcataccaactgagctaagctcac 48  Q
    |||||||||||| |||||||||||||||||||||||    
T  54021366 aatatgcaatatccataccaactgagctaagctcac 54021401  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 52575498 - 52575466
Alignment:
Q  16 atgcaatattcataccaactgagctaagctcac 48  Q
    ||||||||||| |||||||||||||||||||||    
T  52575498 atgcaatattcgtaccaactgagctaagctcac 52575466  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 48
Target Start/End: Original strand, 18551665 - 18551700
Alignment:
Q  13 aatatgcaatattcataccaactgagctaagctcac 48  Q
    |||||||||||| |||||||||||||||||||||||    
T  18551665 aatatgcaatatccataccaactgagctaagctcac 18551700  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 46161155 - 46161189
Alignment:
Q  13 aatatgcaatattcataccaactgagctaagctca 47  Q
    |||||||||||||| ||||||||||||||||||||    
T  46161155 aatatgcaatattcctaccaactgagctaagctca 46161189  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 25034939 - 25034907
Alignment:
Q  16 atgcaatattcataccaactgagctaagctcac 48  Q
    ||||||||||| |||||||||||||||||||||    
T  25034939 atgcaatattcctaccaactgagctaagctcac 25034907  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 31762176 - 31762208
Alignment:
Q  13 aatatgcaatattcataccaactgagctaagct 45  Q
    |||||||||||||| ||||||||||||||||||    
T  31762176 aatatgcaatattcttaccaactgagctaagct 31762208  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 10517234 - 10517202
Alignment:
Q  16 atgcaatattcataccaactgagctaagctcac 48  Q
    ||||||||| |||||||||||||||||||||||    
T  10517234 atgcaatatccataccaactgagctaagctcac 10517202  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 31705934 - 31705902
Alignment:
Q  16 atgcaatattcataccaactgagctaagctcac 48  Q
    ||||||||| |||||||||||||||||||||||    
T  31705934 atgcaatatccataccaactgagctaagctcac 31705902  T

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