View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14847_high_13 (Length: 225)
Name: NF14847_high_13
Description: NF14847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14847_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 22625152 - 22624932
Alignment:
| Q |
1 |
tctggccactgctattgtacctttacttaaactcctctgcttaactgtcattggattacttcttgcaaaccctacaatgcaattcatcccaaaagctacc |
100 |
Q |
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| T |
22625152 |
tctggccactgctattgtacctttacttaaactcctctgcttaactgtcattggattacttcttgcaaaccctacaatgcaattcatcccaaaagctacc |
22625053 |
T |
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| Q |
101 |
tttaaactccttagtaaacttgtctttgctctgtttttaccgtgtcttatttttaccgaacttggcgaaagtattacacttgagaattttgtggattggt |
200 |
Q |
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| T |
22625052 |
tttaaactccttagtaaacttgtttttgctctgtttttaccgtgtcttatttttaccgaacttggcgaaagtattacacttgagaattttgtggattggt |
22624953 |
T |
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| Q |
201 |
ggtttattccggttaatgttc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
22624952 |
ggtttattccggttaatgttc |
22624932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 219
Target Start/End: Original strand, 48992621 - 48992781
Alignment:
| Q |
59 |
cttcttgcaaaccctacaatgcaattcatcccaaaagctacctttaaactccttagtaaacttgtctttgctctgtttttaccgtgtcttatttttaccg |
158 |
Q |
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|||||||||||||| | |||| |||| || || ||||| || ||||||||||| ||||||||||| ||||| | |||||||| || || || |||| | |
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| T |
48992621 |
cttcttgcaaacccaagaatgaaattaattcctaaagccacatttaaactcctaagtaaacttgtatttgcattatttttaccctgcctaatatttagtg |
48992720 |
T |
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| Q |
159 |
aacttggcgaaagtattacacttgagaattttgtggattggtggtttattccggttaatgt |
219 |
Q |
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| T |
48992721 |
aacttggttcaagcattactcttgagaattttaaggaatggtggttcataccagttaatgt |
48992781 |
T |
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