View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14847_high_3 (Length: 493)
Name: NF14847_high_3
Description: NF14847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14847_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 49883996 - 49883771
Alignment:
| Q |
18 |
attctgataaaaatggaatattattatacaaattgtgtgtgatgttgaattggtgcttttatatttctttgatgaacaatgaggatcaaaaatatcaaac |
117 |
Q |
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| T |
49883996 |
attctgataaaaatggaatattattatacaaattgtgtgtgatgttgaattggtgcttttatatttctttgatgaacaatgaggatcaaaagtatcaaac |
49883897 |
T |
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| Q |
118 |
aaaaattacaccatcaaagggtcaacgattacatctttactcaaagataagacaaagttatgccagtaattttttaacttcatttaaaattttgtccgtt |
217 |
Q |
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| T |
49883896 |
aaaaattacaccatcaaagggtcaacgattacatctttactcaaagataggacaaagttatgccagtagttttttaatttcatttaaaatttggtccgtt |
49883797 |
T |
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| Q |
218 |
gcaagtaagtagatggtaagattgaa |
243 |
Q |
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| T |
49883796 |
gcaagtaagtagatggtgagattgaa |
49883771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 289 - 488
Target Start/End: Complemental strand, 49883775 - 49883565
Alignment:
| Q |
289 |
ttgaaataaagaaaaactttatttaaaatttgaaacaaattctttatttgttttccatgtcaaattagtcttatatcttaaaaaatgtgtgtgtagttaa |
388 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49883775 |
ttgaaagaaagaaaaactttatttaaaatttgaaacaaattctttatttgttttccatgtcaaattagtcttatatcttaaaaaatgtgtgtgtagttaa |
49883676 |
T |
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| Q |
389 |
tcaaactttcctagtcaattttcactagtacaactacaagtacaagatacataa-----------aaaagaaggtatgtatgtgtttatcagagtccttt |
477 |
Q |
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| T |
49883675 |
tcaaactttcctagtcaattttcactagtacaactacaagtacaagatacataaaaaaaaaaaaaaaaaaaaggtatgtatgtgtttatcagagcccttt |
49883576 |
T |
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| Q |
478 |
tatagtataat |
488 |
Q |
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| T |
49883575 |
tatagtataat |
49883565 |
T |
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