View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14847_high_6 (Length: 356)
Name: NF14847_high_6
Description: NF14847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14847_high_6 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 44901013 - 44901368
Alignment:
| Q |
1 |
agagggaacaggtggcaaatcaccaagatcatcacaacacaagaaaaccggtttaaataacttcaaaactagaaaggcttatttttattgggtggcggcg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44901013 |
agagggaacaggtggcaaatcaccaagatcatcacaacgcaagaaaaccggtttaaataacttcaaaactagaaaggcttatttttattgggtggcggcg |
44901112 |
T |
|
| Q |
101 |
aaacaaggtttctttgattggtttaaagatgtaatgaatgaggtggtggaagaagaccgtaggagagtaattgagatccacagtcacttgactagtgtat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44901113 |
aaacaaggtttctttgattggtttaaagatgtaatgaatgaggtggtggaagaagaccgtaggagagtaattgagatccacagtcacttgactagtgtat |
44901212 |
T |
|
| Q |
201 |
atgaagacggtgatgctcaatctactcttattgctatgcttcaatcactaaaccatgctaaaactggtgtggatatcttgacgggaacacccgtcaagtc |
300 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44901213 |
atgaagacggtgatgctcaatctgctcttattgctatgcttcaatcactaaaccatgctaaaaatggtgtggatatcttgactggaacacccgtcaagtc |
44901312 |
T |
|
| Q |
301 |
tcactttgctagaccaaaatggcgcagcgtcaacaagcgcattgcacttaatcatc |
356 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
44901313 |
tcactttgctagaccaaaatggtgcagcgtctacaagcgcattgcacttaatcatc |
44901368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 2 - 336
Target Start/End: Original strand, 44892361 - 44892695
Alignment:
| Q |
2 |
gagggaacaggtggcaaatcaccaagatcatcacaacacaagaaaaccggtttaaataacttcaaaactagaaaggcttatttttattgggtggcggcga |
101 |
Q |
| |
|
||||||||| ||| |||||| ||||| ||||| ||||||||||||| | ||| | |||||| ||||||||||||||||||||||| ||| |||| | |
|
|
| T |
44892361 |
gagggaacaattggtaaatcatcaagaccatcagaacacaagaaaactgatttgagtaactttaaaactagaaaggcttatttttactggatggctggtg |
44892460 |
T |
|
| Q |
102 |
aacaaggtttctttgattggtttaaagatgtaatgaatgaggtggtggaagaagaccgtaggagagtaattgagatccacagtcacttgactagtgtata |
201 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||| ||||| || | | || |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
44892461 |
aacaaggtttctttgattggtttaaaggggtaataaatgaggtggctgaagaggatcacaagaaagtaattgagatacacagtcacttgactagtgtata |
44892560 |
T |
|
| Q |
202 |
tgaagacggtgatgctcaatctactcttattgctatgcttcaatcactaaaccatgctaaaactggtgtggatatcttgacgggaacacccgtcaagtct |
301 |
Q |
| |
|
||||||||||||||||| ||| ||||| || || | |||||||||||||||||||||||| ||| |||||||||| | ||||||||| || |||| |
|
|
| T |
44892561 |
tgaagacggtgatgctcgctctgctcttgttactgtccttcaatcactaaaccatgctaaagaaggtttggatatcttaaatggaacacccatcgcgtct |
44892660 |
T |
|
| Q |
302 |
cactttgctagaccaaaatggcgcagcgtcaacaa |
336 |
Q |
| |
|
||||||| |||| || |||||||| ||| |||| |
|
|
| T |
44892661 |
tactttgcacgacccaattggcgcagtgtctacaa |
44892695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 2 - 356
Target Start/End: Original strand, 44917764 - 44918118
Alignment:
| Q |
2 |
gagggaacaggtggcaaatcaccaagatcatcacaacacaagaaaaccggtttaaataacttcaaaactagaaaggcttatttttattgggtggcggcga |
101 |
Q |
| |
|
||||||||| || | |||||||| ||| ||||||||||||||| ||||||||| |||| ||| ||||||| | |||||||||||| ||||| | |
|
|
| T |
44917764 |
gagggaacaagtagtaaatcaccgagaccatcacaacacaagagaaccggtttgaatagctttaaaactaagagggcttatttttactgggttactagag |
44917863 |
T |
|
| Q |
102 |
aacaaggtttctttgattggtttaaagatgtaatgaatgaggtggtggaagaagaccgtaggagagtaattgagatccacagtcacttgactagtgtata |
201 |
Q |
| |
|
|||| |||| |||||||||||||||| |||||||||||||||| ||||| || | |||| ||||||||||| | |||| | | | |||||||| || |
|
|
| T |
44917864 |
aacagggttcatttgattggtttaaaggagtaatgaatgaggtggctgaagatgatcataggggagtaattgagctacacaattattgtactagtgttta |
44917963 |
T |
|
| Q |
202 |
tgaagacggtgatgctcaatctactcttattgctatgcttcaatcactaaaccatgctaaaactggtgtggatatcttgacgggaacacccgtcaagtct |
301 |
Q |
| |
|
|||||| |||||||||| ||| |||||||||||||||| |||||||| || |||||||||| ||||||||||||| | | ||||||| |||||||||| |
|
|
| T |
44917964 |
tgaagagggtgatgctcgctctgctcttattgctatgctccaatcacttaatcatgctaaaaatggtgtggatatcgtctctggaacacgcgtcaagtct |
44918063 |
T |
|
| Q |
302 |
cactttgctagaccaaaatggcgcagcgtcaacaagcgcattgcacttaatcatc |
356 |
Q |
| |
|
|||||||||| ||| || ||||| || ||| |||||||||||||||||||||||| |
|
|
| T |
44918064 |
cactttgctaaacctaattggcgtagtgtctacaagcgcattgcacttaatcatc |
44918118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University