View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14847_high_7 (Length: 337)

Name: NF14847_high_7
Description: NF14847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14847_high_7
NF14847_high_7
[»] chr2 (1 HSPs)
chr2 (1-333)||(45394055-45394387)
[»] chr4 (3 HSPs)
chr4 (1-326)||(52740666-52740991)
chr4 (101-335)||(13539369-13539603)
chr4 (9-71)||(13539289-13539351)
[»] chr8 (1 HSPs)
chr8 (11-324)||(35781972-35782285)
[»] chr7 (2 HSPs)
chr7 (101-335)||(9668345-9668579)
chr7 (9-71)||(9668265-9668327)
[»] chr1 (1 HSPs)
chr1 (10-66)||(47836263-47836319)


Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 45394055 - 45394387
Alignment:
Q  1 aacatcttctagtttcttcttttccgtctccaacatcttttgtgcctcctcatattgtctattgtaatctttgcaagtcggagaattttctgctgacttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45394055 aacatcttctagtttcttcttttccgtctccaacatcttttgtgcctcctcatattgtctattgtaatctttgcaagtcggagaattttctgctgacttt 45394154  T
Q  101 gaatcctcaaactcagtggttcctttgatgtagctattgaggacaacgttagtgtcgggttgaccaaaacagtagagtttgtcaccaggggaaaacacaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  45394155 gaatcctcaaactcagtggttcctttgatgtagctattgaggacaacgttagtgtcgggttgcccaaaacagtagagtttgtcaccaggggaaaacacaa 45394254  T
Q  201 tgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtgacaagtttgttggaatcttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45394255 tgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtgacaagtttgttggaatcttt 45394354  T
Q  301 ctcaaccttcttgatctcaatcttctggcgccc 333  Q
    |||||||||||||||||||||||||||||||||    
T  45394355 ctcaaccttcttgatctcaatcttctggcgccc 45394387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 52740666 - 52740991
Alignment:
Q  1 aacatcttctagtttcttcttttccgtctccaacatcttttgtgcctcctcatattgtctattgtaatctttgcaagtcggagaattttctgctgacttt 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| | | ||| || |||||||||||  ||||    
T  52740666 aacatcttctagtttcttcttttccatctccaacatcttttgtgcctccacatattgtctattgtaatcttggtaggtcagaaaattttctgctaccttt 52740765  T
Q  101 gaatcctcaaactcagtggttcctttgatgtagctattgaggacaacgttagtgtcgggttgaccaaaacagtagagtttgtcaccaggggaaaacacaa 200  Q
    ||||||||||||||||||||||||||||||||||| |||||||||  ||  ||||||||||| ||||||||  | |||||||||||||| ||||||||||    
T  52740766 gaatcctcaaactcagtggttcctttgatgtagctgttgaggacagagtatgtgtcgggttggccaaaacaaaatagtttgtcaccaggagaaaacacaa 52740865  T
Q  201 tgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtgacaagtttgttggaatcttt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||| |  || |||||    
T  52740866 tgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtcacttgtttctgtgattcttt 52740965  T
Q  301 ctcaaccttcttgatctcaatcttct 326  Q
    ||||||||||||||||||||||||||    
T  52740966 ctcaaccttcttgatctcaatcttct 52740991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 101 - 335
Target Start/End: Original strand, 13539369 - 13539603
Alignment:
Q  101 gaatcctcaaactcagtggttcctttgatgtagctattgaggacaacgttagtgtcgggttgaccaaaacagtagagtttgtcaccaggggaaaacacaa 200  Q
    ||||||||||||||||||||| | |||||||||||||| || |    ||   ||| |||||||||||| ||  | ||||||||    ||||||||||| |    
T  13539369 gaatcctcaaactcagtggtttcgttgatgtagctattaagaattgtgtcgatgttgggttgaccaaagcaaaatagtttgtcggacggggaaaacacca 13539468  T
Q  201 tgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtgacaagtttgttggaatcttt 300  Q
      |||||| ||||  | |||||||||||||||||||| ||||||||| |||||| |||||||||||  |||||||| |||||  || |||| ||  ||||    
T  13539469 ccatggctacatgtgcgtcacataagacacaaagttcacttgcttttttgaatagaccttgtcttcgctttgagaatgtgacttgtctgttcgatgcttt 13539568  T
Q  301 ctcaaccttcttgatctcaatcttctggcgcccta 335  Q
     |||| |||||||||||| ||||||| | ||||||    
T  13539569 gtcaatcttcttgatctcgatcttcttgtgcccta 13539603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 13539289 - 13539351
Alignment:
Q  9 ctagtttcttcttttccgtctccaacatcttttgtgcctcctcatattgtctattgtaatctt 71  Q
    ||||||||||||| |||| ||||||||| |||  ||||||||||||| |||||||||| ||||    
T  13539289 ctagtttcttcttctccgactccaacatttttaatgcctcctcatatcgtctattgtactctt 13539351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 11 - 324
Target Start/End: Complemental strand, 35782285 - 35781972
Alignment:
Q  11 agtttcttcttttccgtctccaacatcttttgtgcctcctcatattgtctattgtaatctttgcaagtcggagaattttctgctgactttgaatcctcaa 110  Q
    |||||||  |||||| | ||||||| |||| ||||||||||||||||| ||||||| |||||| | |||| ||||||| | | ||| |||||| | ||||    
T  35782285 agtttctgtttttccatttccaacacctttagtgcctcctcatattgtttattgtactctttgtaggtcgaagaatttcccgttgagtttgaaacatcaa 35782186  T
Q  111 actcagtggttcctttgatgtagctattgaggacaacgttagtgtcgggttgaccaaaacagtagagtttgtcaccaggggaaaacacaatgatggctgc 210  Q
    ||||| ||||||| |||||||||||||| ||||    ||  ||||  |||| ||| |||||||  |||||| || |||| |||||||| |||||||||||    
T  35782185 actcaatggttccattgatgtagctattaaggatttggtcggtgtttggttcaccgaaacagtgtagtttgccagcaggagaaaacacgatgatggctgc 35782086  T
Q  211 atgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtgacaagtttgttggaatctttctcaaccttc 310  Q
    |||||||||||||||    |||||||| || ||||||| |||||||||||||||||||||||||||||||||  | |||||||  ||||| |||| |||     
T  35782085 atgaacatcacataaagtgcaaagttcactcgcttttcggaataaaccttgtcttctttttgagaaagtgacttgcttgttggtttctttttcaagcttt 35781986  T
Q  311 ttgatctcaatctt 324  Q
    ||||||||||||||    
T  35781985 ttgatctcaatctt 35781972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 101 - 335
Target Start/End: Original strand, 9668345 - 9668579
Alignment:
Q  101 gaatcctcaaactcagtggttcctttgatgtagctattgaggacaacgttagtgtcgggttgaccaaaacagtagagtttgtcaccaggggaaaacacaa 200  Q
    ||||||||||||||||||||| | |||||||||||||| || |    ||   ||| |||||||||||| ||  | ||||||||    ||||||||||| |    
T  9668345 gaatcctcaaactcagtggtttcgttgatgtagctattaagaattgtgtcgatgttgggttgaccaaagcaaaatagtttgtcggacggggaaaacacca 9668444  T
Q  201 tgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtgacaagtttgttggaatcttt 300  Q
      |||||| ||||  | |||||||||||||||||||| ||||||||| |||||| |||||||||||  |||||||| |||||  || |||| ||  ||||    
T  9668445 ccatggctacatgtgcgtcacataagacacaaagttcacttgcttttttgaatagaccttgtcttcgctttgagaatgtgacttgtctgttcgatgcttt 9668544  T
Q  301 ctcaaccttcttgatctcaatcttctggcgcccta 335  Q
     |||| |||||||||||| ||||||| | ||||||    
T  9668545 gtcaatcttcttgatctcgatcttcttgtgcccta 9668579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 9668265 - 9668327
Alignment:
Q  9 ctagtttcttcttttccgtctccaacatcttttgtgcctcctcatattgtctattgtaatctt 71  Q
    ||||||||||||| |||| ||||||||| |||  ||||||||||||| |||||||||| ||||    
T  9668265 ctagtttcttcttctccgactccaacatttttaatgcctcctcatatcgtctattgtactctt 9668327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 47836319 - 47836263
Alignment:
Q  10 tagtttcttcttttccgtctccaacatcttttgtgcctcctcatattgtctattgta 66  Q
    |||||||||||| ||   ||| |||||||||  ||||||||||||||||||||||||    
T  47836319 tagtttcttcttctctaactctaacatctttaatgcctcctcatattgtctattgta 47836263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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