View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14847_high_8 (Length: 318)
Name: NF14847_high_8
Description: NF14847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14847_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 34867732 - 34868033
Alignment:
| Q |
1 |
agatacaggactcagatttggtttcaaatttgccaaatccaaacctgattcttgtcttattaaccttgacaaaccataacaccactctctacacataaat |
100 |
Q |
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| T |
34867732 |
agatacaggacttagatttggtttcaaatttgccaaatccaaacttgattcttgtcttatcaaccttgacaaaccataacaccactctctacacataaat |
34867831 |
T |
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| Q |
101 |
gctatgtagcaccgacacgtatttgtgtccaacactgacacatgtgattatattgaatgatttcattttcccaaaccattcttcgtgtcgacgtgtccgt |
200 |
Q |
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| T |
34867832 |
gctatgtagcaccgacacgtatttgtgtccaacactgacacatgtgattatattgaatgatttcattttcccaaaccattcttggtgtcgacgtgtccgt |
34867931 |
T |
|
| Q |
201 |
gtctatatcatgtctagtgtccgtttctgtgtttcatgatataaatgttataattcctattcaaatgaaaatgatatcataattgcacattacacatctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34867932 |
gtctatatcatgtctagtgtccgtttctgtgtttcatgatataaatgttataattcctattcaaatgaaaatgatatcataattgcacattacacatctt |
34868031 |
T |
|
| Q |
301 |
tc |
302 |
Q |
| |
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|| |
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| T |
34868032 |
tc |
34868033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 202
Target Start/End: Original strand, 9024178 - 9024248
Alignment:
| Q |
132 |
acactgacacatgtgattatattgaatgatttcattttcccaaaccattcttcgtgtcgacgtgtccgtgt |
202 |
Q |
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| T |
9024178 |
acactgacacatatgattacattgaattatgtcattttctcaaattatcatttgtgtcgacgtgtccgtgt |
9024248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 42874588 - 42874536
Alignment:
| Q |
123 |
ttgtgtccaacactgacacatgtgattatattgaatgatttcattttcccaaa |
175 |
Q |
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| T |
42874588 |
ttgtgtccaacactgacacttgtgattacattgaattatgtcattttctcaaa |
42874536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 6736494 - 6736445
Alignment:
| Q |
185 |
gtgtcgacgtgtccgtgtctatatcatgtctagtgtccgtttctgtgttt |
234 |
Q |
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| T |
6736494 |
gtgtcgacgtgtcagtgtctttgtcatgtctagtgtccgtgtttgtgttt |
6736445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 196
Target Start/End: Original strand, 23287351 - 23287415
Alignment:
| Q |
132 |
acactgacacatgtgattatattgaatgatttcattttcccaaaccattcttcgtgtcgacgtgt |
196 |
Q |
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| T |
23287351 |
acactgacacatataattatattgaattatgtcattttcctaaattattattggtgtcgacgtgt |
23287415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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