View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14847_low_10 (Length: 366)
Name: NF14847_low_10
Description: NF14847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14847_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 358
Target Start/End: Original strand, 43257315 - 43257654
Alignment:
| Q |
19 |
agagataaaccttgacaggagcagctgccttgacaacaaaggatccttttctagaagacccaactgaagatgggagtgatcttgctccaaaactatgtct |
118 |
Q |
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| T |
43257315 |
agagataaaccttgacaggagcagctgccttgacaacaaaggatccttttctagaagacccaattgaagatgggagtgatcttgctccaaaactctgtct |
43257414 |
T |
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| Q |
119 |
tacagcttcagctgcaaaagtatgagatgatgacgacaatagaatttgtgtagccatgtttttctcttctttgttgcctctaggaacaagttttttcttc |
218 |
Q |
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| T |
43257415 |
tacagcttcagctgcaaaagtaagagatgacgacgacaatagaacttgtgtagccatgtttttcccttctttgttgcctctaggaacaagttttttcttc |
43257514 |
T |
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| Q |
219 |
ttcaagaatgtagtagatggttaagaatgaatgatagataaatggaggaagatatgaagaactctaagtcactactttcaagtttgtgcatgcaagcaac |
318 |
Q |
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| T |
43257515 |
ttcaagaatgtagtagatggttaagaatgaatgatagataaatggaggaagatatgaagaactctaagtcactactttcaagtttgtgcatgcaagcaac |
43257614 |
T |
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| Q |
319 |
gtggaagttcttgtggaagactgcatgtgatgatgatgtc |
358 |
Q |
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| T |
43257615 |
gtggaagttcttgtggaagactgcatgtgatgatgatgtc |
43257654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 41 - 258
Target Start/End: Original strand, 43260933 - 43261150
Alignment:
| Q |
41 |
agctgccttgacaacaaaggatccttttctagaagacccaactgaagatgggagtgatcttgctccaaaactatgtcttacagcttcagctgcaaaagta |
140 |
Q |
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| T |
43260933 |
agctgccttgacaacaaaggaaccttttctagaagaccctattgaagatgggagtgatcttgctccaaaactctgtctcacagcttcagctgcaaaagta |
43261032 |
T |
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| Q |
141 |
tgagatgatgacgacaatagaatttgtgtagccatgtttttctcttctttgttgcctctaggaacaagttttttcttcttcaagaatgtagtagatggtt |
240 |
Q |
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| T |
43261033 |
agagatgatgacgacactagagcttgtgtagccatgtttttccctcctttgttgcctctaggaacaagttttttcttcttcaagaatgtagtagatggtt |
43261132 |
T |
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| Q |
241 |
aagaatgaatgatagata |
258 |
Q |
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| T |
43261133 |
aagaatgaatgatagata |
43261150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 286
Target Start/End: Original strand, 43261169 - 43261197
Alignment:
| Q |
258 |
aaatggaggaagatatgaagaactctaag |
286 |
Q |
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| T |
43261169 |
aaatggaggaagatatgaagaactctaag |
43261197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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