View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14847_low_12 (Length: 337)
Name: NF14847_low_12
Description: NF14847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14847_low_12 |
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| [»] scaffold0008 (2 HSPs) |
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Alignment Details
Target: scaffold0008 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 20 - 337
Target Start/End: Complemental strand, 68351 - 68035
Alignment:
| Q |
20 |
cctcattccccaacgattatgatacactctctacttcacattgaggtttttcaaatttaatggtgtttcttaatccctactgtttggttgcactcacaat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
68351 |
cctcattccccaacgattatgatacactctctacttcacattgaggtttttcaaatttaatggtttttcttaatccctgctgtttggttgcactcacaat |
68252 |
T |
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| Q |
120 |
gtttgtctttgagttttccacctccaccccttttcctttatctttagatcccccattattattactcgcttcagcaaacaagtttcttccacatgagcta |
219 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
68251 |
gtttgtcgttgagttttccacctccaccccttttcctttatctttagatcccccattattattactcacttcagcaaacaagttccttccacatgagcta |
68152 |
T |
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| Q |
220 |
gaactgatttccttcttgatctccattgatatttttgaaagagggtaagccttcatgcattgcacatatggtaattctttctcctaaattttattcagtt |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
68151 |
gaactgatttccttcttgatctccattgatatttttgaaagaggggaagccttcatgcattgcacatatggtaattctttctcct-aatttcattcagtt |
68053 |
T |
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| Q |
320 |
tcatcttttccgtccatt |
337 |
Q |
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|||||||||||||||||| |
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| T |
68052 |
tcatcttttccgtccatt |
68035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 20 - 337
Target Start/End: Complemental strand, 76194 - 75878
Alignment:
| Q |
20 |
cctcattccccaacgattatgatacactctctacttcacattgaggtttttcaaatttaatggtgtttcttaatccctactgtttggttgcactcacaat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
76194 |
cctcattccccaacgattatgatacactctctacttcacattgaggtttttcaaatttaatggtttttcttaatccctgctgtttggttgcactcacaat |
76095 |
T |
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| Q |
120 |
gtttgtctttgagttttccacctccaccccttttcctttatctttagatcccccattattattactcgcttcagcaaacaagtttcttccacatgagcta |
219 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
76094 |
gtttgtcgttgagttttccacctccaccccttttcctttatctttagatcccccattattattactcacttcagcaaacaagttccttccacatgagcta |
75995 |
T |
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| Q |
220 |
gaactgatttccttcttgatctccattgatatttttgaaagagggtaagccttcatgcattgcacatatggtaattctttctcctaaattttattcagtt |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
75994 |
gaactgatttccttcttgatctccattgatatttttgaaagaggggaagccttcatgcattgcacatatggtaattctttctcct-aatttcattcagtt |
75896 |
T |
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| Q |
320 |
tcatcttttccgtccatt |
337 |
Q |
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|||||||||||||||||| |
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| T |
75895 |
tcatcttttccgtccatt |
75878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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