View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14847_low_17 (Length: 249)

Name: NF14847_low_17
Description: NF14847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14847_low_17
NF14847_low_17
[»] chr4 (15 HSPs)
chr4 (18-249)||(7907763-7907994)
chr4 (85-227)||(7877231-7877367)
chr4 (84-249)||(7774238-7774397)
chr4 (159-249)||(7904611-7904701)
chr4 (168-249)||(45372466-45372547)
chr4 (197-249)||(7800254-7800306)
chr4 (197-249)||(7813097-7813149)
chr4 (197-249)||(7822586-7822638)
chr4 (161-241)||(45366638-45366718)
chr4 (205-248)||(48898347-48898390)
chr4 (150-249)||(48902520-48902619)
chr4 (143-249)||(45385196-45385302)
chr4 (196-249)||(48156836-48156889)
chr4 (197-249)||(49044638-49044690)
chr4 (197-249)||(49049008-49049060)
[»] chr3 (2 HSPs)
chr3 (197-248)||(11006372-11006423)
chr3 (171-249)||(47452316-47452394)
[»] chr8 (2 HSPs)
chr8 (187-249)||(12199914-12199976)
chr8 (187-249)||(12444342-12444404)
[»] chr1 (1 HSPs)
chr1 (197-249)||(24340031-24340083)


Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 7907763 - 7907994
Alignment:
Q  18 catcataatcataatcggtttttaaaactctgcttatataagactgatcgagtggtaaattggaaacccttcctgtaaaattaaggtttacaagatggta 117  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7907763 catcatcatcatcatcggtttttaaaactctgcttatataagactgatcgagtggtaaattggaaacccttcctgtaaaattagggtttacaagatggta 7907862  T
Q  118 gagagctcggaggagaagaagaagaagacgacgacactgccgtatcttcatcatgaattgattttccagatcctactgtggttgccggtgaagtctcttg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||     
T  7907863 gagagctcggaggagaagaagaagaagacgacgacactgccgtatcttcctcatgaattgattttccagatcctactgaggttgccggtgaagtctctta 7907962  T
Q  218 cacgtttcaagtctgtttgtaagtcatggttt 249  Q
    ||||||||||||||||| ||||||||||||||    
T  7907963 cacgtttcaagtctgttcgtaagtcatggttt 7907994  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 85 - 227
Target Start/End: Original strand, 7877231 - 7877367
Alignment:
Q  85 ccttcctgtaaaattaaggtttacaagatggtagagagctcggaggagaagaagaagaagacgacgacactgccgtatcttcatcatgaattgattttcc 184  Q
    |||||||||||||||| | ||||||||||||||||| ||  |||||||||||||||||||||      || ||||||||||| ||||||||||||| |||    
T  7877231 ccttcctgtaaaattaggatttacaagatggtagagtgcatggaggagaagaagaagaagac------acggccgtatcttcctcatgaattgattatcc 7877324  T
Q  185 agatcctactgtggttgccggtgaagtctcttgcacgtttcaa 227  Q
    | |||||  | ||||||| |||||||||||||  |||||||||    
T  7877325 aaatcctgatttggttgctggtgaagtctcttatacgtttcaa 7877367  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 84 - 249
Target Start/End: Complemental strand, 7774397 - 7774238
Alignment:
Q  84 cccttcctgtaaaattaaggtttacaagatggtagagagctcggaggagaagaagaagaagacgacgacactgccgtatcttcatcatgaattgattttc 183  Q
    ||||| ||||||||||| |||||||||||||||||||||| || ||||||||||| ||||      ||||||||||||||||| ||||||||||||| |     
T  7774397 ccctttctgtaaaattagggtttacaagatggtagagagcacgcaggagaagaagcagaa------gacactgccgtatcttcctcatgaattgattatt 7774304  T
Q  184 cagatcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttt 249  Q
    || ||| |  || || |||||||||||||||||   | |||||| | ||||||||||  |||||||    
T  7774303 caaatcttgatgcggctgccggtgaagtctcttattcatttcaaatgtgtttgtaagctatggttt 7774238  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 249
Target Start/End: Original strand, 7904611 - 7904701
Alignment:
Q  159 gtatcttcatcatgaattgattttccagatcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttt 249  Q
    |||||||| || |||||||||| | || ||| |  |||||||||| ||||||||||||  ||||||||| | ||||||||||| |||||||    
T  7904611 gtatcttcctcgtgaattgattattcaaatcttgatgtggttgcctgtgaagtctcttatacgtttcaaatgtgtttgtaagttatggttt 7904701  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 249
Target Start/End: Complemental strand, 45372547 - 45372466
Alignment:
Q  168 tcatgaattgattttccagatcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttt 249  Q
    ||||||||||||  | || || |||||  ||||||||||||||||||||  ||||||||| | |||||||||||| ||||||    
T  45372547 tcatgaattgatgattcaaattctactaaggttgccggtgaagtctcttatacgtttcaaatgtgtttgtaagtcttggttt 45372466  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 7800254 - 7800306
Alignment:
Q  197 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttt 249  Q
    ||||||||||||||| ||||  ||||||||||| ||||||||| |||||||||    
T  7800254 ggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttt 7800306  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 7813097 - 7813149
Alignment:
Q  197 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttt 249  Q
    ||||||||||||||| ||||  ||||||||||| ||||||||| |||||||||    
T  7813097 ggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttt 7813149  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 7822586 - 7822638
Alignment:
Q  197 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttt 249  Q
    ||||||||||||||| ||||  ||||||||||| ||||||||| |||||||||    
T  7822586 ggttgccggtgaagtatcttatacgtttcaagtgtgtttgtaaatcatggttt 7822638  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 241
Target Start/End: Complemental strand, 45366718 - 45366638
Alignment:
Q  161 atcttcatcatgaattgattttccagatcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagt 241  Q
    |||||| ||||||||||||  |||| ||||||||  |||| || ||||||||||||  |||||||||||  ||||||||||    
T  45366718 atcttcctcatgaattgatgatccaaatcctactaaggttaccagtgaagtctcttatacgtttcaagtgcgtttgtaagt 45366638  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 248
Target Start/End: Original strand, 48898347 - 48898390
Alignment:
Q  205 gtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggtt 248  Q
    |||||||||||| |||||||||||| |||||||||||| |||||    
T  48898347 gtgaagtctcttacacgtttcaagtgtgtttgtaagtcttggtt 48898390  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 249
Target Start/End: Original strand, 48902520 - 48902619
Alignment:
Q  150 gacactgccgtatcttcatcatgaattgattttccagatcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttt 249  Q
    ||||||||||||||| | ||||||||||||  |||| ||  | | |||||||||||| ||||||||    |||||||| | |||||||||||| ||||||    
T  48902520 gacactgccgtatctacctcatgaattgatcatccaaattttgcagtggttgccggtaaagtctctcattcgtttcaaatgtgtttgtaagtcttggttt 48902619  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 249
Target Start/End: Complemental strand, 45385302 - 45385196
Alignment:
Q  143 agacgacgacactgccgtatcttcatcatgaattgattttccagatcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtc 242  Q
    ||||||||||||||||| || | | | ||||||||||  |||| ||||||||  |||| || || ||||||||   ||||||||| || |||||||||||    
T  45385302 agacgacgacactgccgcatatgcctaatgaattgatgatccaaatcctactaaggttaccagttaagtctctcatacgtttcaaatccgtttgtaagtc 45385203  T
Q  243 atggttt 249  Q
     ||||||    
T  45385202 ttggttt 45385196  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 48156889 - 48156836
Alignment:
Q  196 tggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttt 249  Q
    ||||| |||||||||||||||  |||||||||||  ||||||||||| ||||||    
T  48156889 tggttaccggtgaagtctcttctacgtttcaagtgcgtttgtaagtcttggttt 48156836  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 49044690 - 49044638
Alignment:
Q  197 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttt 249  Q
    ||||||| |||| |||||||  ||||||||||| ||||||||||| |||||||    
T  49044690 ggttgccagtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttt 49044638  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 49049060 - 49049008
Alignment:
Q  197 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttt 249  Q
    |||||| ||||| |||||||  ||||||||||| ||||||||||| |||||||    
T  49049060 ggttgctggtgatgtctcttttacgtttcaagtgtgtttgtaagttatggttt 49049008  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 248
Target Start/End: Complemental strand, 11006423 - 11006372
Alignment:
Q  197 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggtt 248  Q
    |||||||||||||||| |||  ||||||||||| ||||||||||||||||||    
T  11006423 ggttgccggtgaagtcacttatacgtttcaagtgtgtttgtaagtcatggtt 11006372  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 249
Target Start/End: Complemental strand, 47452394 - 47452316
Alignment:
Q  171 tgaattgattttccagatcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttt 249  Q
    |||||||||  |||||||| |  || ||||||||||||||||||||| ||| |||||||   ||| |||||||||||||    
T  47452394 tgaattgataatccagatcttggtgaggttgccggtgaagtctcttgtacgcttcaagtgcatttctaagtcatggttt 47452316  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 249
Target Start/End: Original strand, 12199914 - 12199976
Alignment:
Q  187 atcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttt 249  Q
    ||||| ||| ||||||||||||||||||||  | ||||||| | |||||||||||||||||||    
T  12199914 atcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttt 12199976  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 249
Target Start/End: Original strand, 12444342 - 12444404
Alignment:
Q  187 atcctactgtggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttt 249  Q
    ||||| ||| ||||||||||||||||||||  | ||||||| | |||||||||||||||||||    
T  12444342 atcctgctgaggttgccggtgaagtctcttttatgtttcaaatgtgtttgtaagtcatggttt 12444404  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 24340031 - 24340083
Alignment:
Q  197 ggttgccggtgaagtctcttgcacgtttcaagtctgtttgtaagtcatggttt 249  Q
    |||| ||||| |||||||||   |||||||| |||||||||||||||||||||    
T  24340031 ggttaccggttaagtctcttattcgtttcaaatctgtttgtaagtcatggttt 24340083  T

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