View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14847_low_18 (Length: 248)
Name: NF14847_low_18
Description: NF14847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14847_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 38300668 - 38300437
Alignment:
| Q |
1 |
aatgttgaaagcttaatccttggatcaagaaccgctcccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagcatcctttcag |
100 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38300668 |
aatgttgaaagcttaatccttgggtcaagaaccgctcccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagcatcctttcag |
38300569 |
T |
|
| Q |
101 |
ccattctctttatatcttcatcttgatctcccaaacaatcaactaaaacacattggactttccaaacttgcaaaaaatacaagttggaagtaggatgtgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38300568 |
ccattctctttatatcttcatcttgatctcccaaacaatcaactaaaaggcattggactttccaaacttgcaaaaaatacaagttggaagtaggatgtgt |
38300469 |
T |
|
| Q |
201 |
tgtggcattaatcatgttggcagtttcactaa |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
38300468 |
tgtggcattaatcatgttggcagtttcactaa |
38300437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 38309315 - 38309084
Alignment:
| Q |
1 |
aatgttgaaagcttaatccttggatcaagaaccgctcccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagcatcctttcag |
100 |
Q |
| |
|
||||| |||||||| |||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
38309315 |
aatgtggaaagctttatccttgggtcaagaaccgctcccaatgcaagaacaacactatactcttcccaatatttctcaaacttggtcaacatcctttcaa |
38309216 |
T |
|
| Q |
101 |
ccattctctttatatcttcatcttgatctcccaaacaatcaactaaaacacattggactttccaaacttgcaaaaaatacaagttggaagtaggatgtgt |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38309215 |
ccattctctttatatcttcatcttcatctcccaaattatcaactagaacacattggactttccaaacttgcaaaaaatacaagttggaagtacgatgtgt |
38309116 |
T |
|
| Q |
201 |
tgtggcattaatcatgttggcagtttcactaa |
232 |
Q |
| |
|
|| |||| ||| ||||||||||||| |||| |
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|
| T |
38309115 |
tgcaccatttatcgtgttggcagtttcgctaa |
38309084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 38321413 - 38321187
Alignment:
| Q |
1 |
aatgttgaaagcttaatccttggatcaagaaccgctcccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagcatcctttcag |
100 |
Q |
| |
|
||||| |||| ||| |||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
38321413 |
aatgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctcaaacttgctcatcatcctttcag |
38321314 |
T |
|
| Q |
101 |
ccattctctttatatcttcatcttgatctcccaaacaatcaactaaaacacattggactttccaaacttgcaaaaaatacaagttggaagtaggatgtgt |
200 |
Q |
| |
|
|||||||||||||| ||||||||| ||||| ||||| |||| ||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||| |
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|
| T |
38321313 |
ccattctctttatagcttcatcttcatctctcaaactatcagctaaaacacattgaactttccaaacttgcaaaaaatacatgtttgaagtaggatgtgc |
38321214 |
T |
|
| Q |
201 |
tgtggcattaatcatgttggcagtttc |
227 |
Q |
| |
|
|||| ||||||||||||| |||||||| |
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|
| T |
38321213 |
tgtgccattaatcatgttagcagtttc |
38321187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 38317312 - 38317091
Alignment:
| Q |
7 |
gaaagcttaatccttggatcaagaaccgctcccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagcatcctttcagccattc |
106 |
Q |
| |
|
|||| ||| |||| ||| |||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||| | ||| ||||||||||||||||| |
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|
| T |
38317312 |
gaaaacttcatccgtgggtcaagaactgctcccagtgcaagaacaacactatactcatcccaatatttgtcaaactcgctcatcatcctttcagccattc |
38317213 |
T |
|
| Q |
107 |
tctttatatcttcatcttgatctcccaaacaatcaactaaaacacattggactttccaaacttgcaaaaaatacaagttggaagtaggatgtgttgtggc |
206 |
Q |
| |
|
|||||||| ||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||| | |
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| T |
38317212 |
tctttataactttatcttcatctcccaaactatcaactagaacacattggactttccaaacttgcaaaaaacacaagtttgaagtaggatgcgttgtgtc |
38317113 |
T |
|
| Q |
207 |
attaatcatgttggcagtttca |
228 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
38317112 |
attaatcatgttggcagtttca |
38317091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 38326163 - 38325935
Alignment:
| Q |
1 |
aatgttgaaagcttaatccttggatcaagaaccgctcccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagcatcctttcag |
100 |
Q |
| |
|
|||||||||| ||||||| ||| |||||||||||||||| ||||||||||||||| ||||||| |||| |||| ||||||||| ||| ||||||||||| |
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|
| T |
38326163 |
aatgttgaaaatttaatccgtgggtcaagaaccgctcccaatgcaagaacaacactgtactcattccaaaatttgtcaaacttgctcatcatcctttcag |
38326064 |
T |
|
| Q |
101 |
ccattctctttatatcttcatcttgatctcccaaacaatcaactaaaacacattggactttccaaacttgcaaaaaatacaagttggaagtaggatgtgt |
200 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||| | |||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||| || |
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|
| T |
38326063 |
ccattctctttataacttcatcttcatctcccaaagtagcaactagaacacattggactttccaaacttgcaaaaattacaaattggaagtaggatgcgt |
38325964 |
T |
|
| Q |
201 |
tgtggcattaatcatgttggcagtttcac |
229 |
Q |
| |
|
|||| ||||||||||||| |||||||||| |
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|
| T |
38325963 |
tgtgtcattaatcatgttagcagtttcac |
38325935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 38 - 229
Target Start/End: Complemental strand, 38306540 - 38306349
Alignment:
| Q |
38 |
ccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagcatcctttcagccattctctttatatcttcatcttgatctcccaaaca |
137 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||||| || |||||||| |||||||||| |||| ||||||||| ||||||||||| |
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|
| T |
38306540 |
ccattgcaagaacaacactatgctcatcccaatatttcttaaacttgcccatcatccttttagccattctcgctataacttcatcttcatctcccaaact |
38306441 |
T |
|
| Q |
138 |
atcaactaaaacacattggactttccaaacttgcaaaaaatacaagttggaagtaggatgtgttgtggcattaatcatgttggcagtttcac |
229 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||| |
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|
| T |
38306440 |
atcaacaagaacacattggactttccaaacttgcaaaaaatacaagttggaagtgggatgtgttgcaccattgatcatgttggcagtttcac |
38306349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 16 - 229
Target Start/End: Complemental strand, 38313892 - 38313681
Alignment:
| Q |
16 |
atccttggatcaagaaccgctcccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagcatcctttcagccattctctttatat |
115 |
Q |
| |
|
|||| ||| |||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| || ||| |||| |||||||||| || | |
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|
| T |
38313892 |
atccgtgggtcaagaactgctcccattgcaagaacaacacta--ctcatcccaatatttcttaaacttgcccatcatacttttagccattctcgctacaa |
38313795 |
T |
|
| Q |
116 |
cttcatcttgatctcccaaacaatcaactaaaacacattggactttccaaacttgcaaaaaatacaagttggaagtaggatgtgttgtggcattaatcat |
215 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||| | |||||||||| |
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|
| T |
38313794 |
attcatcttcatctcccaaactatcaactaaaacacattgaagtttccaaacttgcgaaaaatacaagttggaagtaggatgtgttgcgccattaatcat |
38313695 |
T |
|
| Q |
216 |
gttggcagtttcac |
229 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
38313694 |
gttggcagtttcac |
38313681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 38850042 - 38850255
Alignment:
| Q |
16 |
atccttggatcaagaaccgctcccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagcatcctttcagccattctctttatat |
115 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||| |
|
|
| T |
38850042 |
atccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctcaaacttgctcatcatcctttcagccattttctttatat |
38850141 |
T |
|
| Q |
116 |
cttcatcttgatctcccaaacaatcaactaaaacacattggactttccaaacttgcaaaaaatacaagttggaagtaggatgtgttgtggcattaatcat |
215 |
Q |
| |
|
||||||||| ||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38850142 |
cttcatcttcatctcccaaactatcaactagaacacattggactttccaaacttgtaaaaaatacaagttggaagtaggatgtgttgtgctattaatcat |
38850241 |
T |
|
| Q |
216 |
gttggcagtttcac |
229 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
38850242 |
gttggcagtttcac |
38850255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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