View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14847_low_2 (Length: 557)
Name: NF14847_low_2
Description: NF14847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14847_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 520; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 5 - 532
Target Start/End: Complemental strand, 30724822 - 30724295
Alignment:
| Q |
5 |
cagaattcagaagctcttggttgaattcgaatattctctaaaaaatagatataatcaaacaaagtctaaataagaggagatatgaaggttaaagaatagt |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30724822 |
cagaattcagaagctcttggttgaattcgaatattctctaaaaaatagatataatcaaacaaagtctaaataagaggagatatgaaggttaaagaatagt |
30724723 |
T |
|
| Q |
105 |
aacaaatatgctcattattactaaccttgaaaactagagtattgagaacaggagttttgtgaagtaagccaaaccaaacttcaccagtaatatagccaag |
204 |
Q |
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| T |
30724722 |
aacaaatatgctcattattactaaccttgaaaactagagtattgagaacaggagtcttgtgaagtaaaccaaaccaaacttcaccagtaatatagccaag |
30724623 |
T |
|
| Q |
205 |
atccaaatggctcaacattgcaaatttaggtagaacagccacattttgttttgtcaaaacctgaatgacatagattaaggatacttgtttgcattgaacc |
304 |
Q |
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| T |
30724622 |
atccaaatggctcaacattgcaaatttaggtagaacagccacattttgttttgtcaaaacctgaatgacatagattaaggatacttgtttgcattgaacc |
30724523 |
T |
|
| Q |
305 |
atatggtctattaacaaactaataaacataattaactctttatttgaactgtgttaaaccgttaaccatgtaataaaattcaggagtatatgcgaataat |
404 |
Q |
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| T |
30724522 |
atatggtctattaacaaactaataaacataattaactctttatttgaactgtgttaaaccgttaaccatgtaataaaattcaggagtatatgcgaataat |
30724423 |
T |
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| Q |
405 |
attggccctccgcatatagtgacagtacataatgtcaacaaattgtgtcaaaattacagactttcttaaaaataactacatatgagaataaacactctac |
504 |
Q |
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| T |
30724422 |
attggccctccgcatatagtgacagtacataatgtcaacaaattgtgtcaaaattacagactttcttaaaaataactacatatgagaataaacactctac |
30724323 |
T |
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| Q |
505 |
aaatattgcttcagaaatcaaatcaata |
532 |
Q |
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| T |
30724322 |
aaatattgcttcagaaatcaaatcaata |
30724295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 121 - 285
Target Start/End: Complemental strand, 30717018 - 30716854
Alignment:
| Q |
121 |
attactaaccttgaaaactagagtattgagaacaggagttttgtgaagtaagccaaaccaaacttcaccagtaatatagccaagatccaaatggctcaac |
220 |
Q |
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||||| |||||||||||||||||||||||||||||||| || |||||||||| ||| |||||||| || ||| | ||||||||||||||||| ||| | |
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| T |
30717018 |
attaccaaccttgaaaactagagtattgagaacaggagacttttgaagtaagcacaacaaaacttcatcactaacagagccaagatccaaatgggtcagc |
30716919 |
T |
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| Q |
221 |
attgcaaatttaggtagaacagccacattttgttttgtcaaaacctgaatgacatagattaagga |
285 |
Q |
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| T |
30716918 |
attgcaaatttaggtagaagaaccatatttggttgtgtgagaacctggatgacaaacattaagga |
30716854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 5 - 269
Target Start/End: Complemental strand, 30710701 - 30710443
Alignment:
| Q |
5 |
cagaattcagaagctcttggttgaattcgaatattctctaaaaaatagatataatcaaacaaagtctaaataagaggagatatgaaggttaaagaatagt |
104 |
Q |
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|||||||||||||||||| ||||||||| |||||| |||| || |||||||||| ||| |||| ||||||||||||||||| | ||||| || || | |
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| T |
30710701 |
cagaattcagaagctcttcattgaattcggatattccctaataagtagatataatgaaaagaagtttaaataagaggagatataattgttaa-gagta-t |
30710604 |
T |
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| Q |
105 |
aacaaatatgctcattattactaaccttgaaaactagagtattgagaacaggagttttgtgaagtaagccaaaccaaacttcaccagtaatatagccaag |
204 |
Q |
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| T |
30710603 |
aataaa-atgttaatta---caaaccttgaaatctagaatagtgagaacaggagtcttctgaagcaagcccaacaaaacttcaccactaacaatgccaac |
30710508 |
T |
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| Q |
205 |
atccaaatggctcaacattgcaaatttaggtagaacagccacattttgttttgtcaaaacctgaa |
269 |
Q |
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| T |
30710507 |
atccaaatggctcaacattgcaaattttggtaaaacagtcatatttgattttgtgagaacctgaa |
30710443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 127 - 283
Target Start/End: Original strand, 11358822 - 11358978
Alignment:
| Q |
127 |
aaccttgaaaactagagtattgagaacaggagttttgtgaagtaagccaaaccaaacttcaccagtaatatagccaagatccaaatggctcaacattgca |
226 |
Q |
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||||| |||||||||||||||||||| ||||| || ||||| |||| | | ||||||||||| ||| | ||||||||||||||||||| ||||||||| |
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| T |
11358822 |
aacctggaaaactagagtattgagaaatggagtcttttgaagaaagctcatcaaaacttcaccactaacaaagccaagatccaaatggcttaacattgca |
11358921 |
T |
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| Q |
227 |
aatttaggtagaacagccacattttgttttgtcaaaacctgaatgacatagattaag |
283 |
Q |
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||| |||||| ||| |||| ||||||| ||| | | |||| |||||| | |||||| |
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| T |
11358922 |
aatgtaggtaaaactgccattttttgttgtgtgagagcctggatgacaaacattaag |
11358978 |
T |
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