View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14847_low_21 (Length: 237)
Name: NF14847_low_21
Description: NF14847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14847_low_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 39289853 - 39289633
Alignment:
| Q |
1 |
ctgcaccagctagcatcatgtgatccttttttccatctgatatgattccaaatgcatgccattctgataatggtgatggactaattctacctaataaacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39289853 |
ctgcaccagctagcatcatgtgatccttttttccatctgatatgattccaaatgcatgccattctgataatggtgatggacttattctacctaataaacc |
39289754 |
T |
|
| Q |
101 |
tgctttaacaccaccttcaaatttaataattgaagcatgatttgatggtgctgtgacactaacttgaacttttttaatacttaaccaaggaatcataatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
39289753 |
tgctttaacaccaccttcaaatttaataattgaagcatgatttgatggtgctgtgacactaacttgtacttttttaatacttaaccaaggaatcataatg |
39289654 |
T |
|
| Q |
201 |
agaattgtgatagctaaagtg |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
39289653 |
agaattgtgatagctaaagtg |
39289633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 39296733 - 39296513
Alignment:
| Q |
1 |
ctgcaccagctagcatcatgtgatccttttttccatctgatatgattccaaatgcatgccattctgataatggtgatggactaattctacctaataaacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39296733 |
ctgcaccagctagcatcatgtgatccttttttccatctgatatgattccaaatgcatgccattctgataatggtgatggacttattctacctaataaacc |
39296634 |
T |
|
| Q |
101 |
tgctttaacaccaccttcaaatttaataattgaagcatgatttgatggtgctgtgacactaacttgaacttttttaatacttaaccaaggaatcataatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
39296633 |
tgctttaacaccaccttcaaatttaataattgaagcatgatttgatggtgctgtgacactaacttgtacttttttaatacttaaccaaggaatcataatg |
39296534 |
T |
|
| Q |
201 |
agaattgtgatagctaaagtg |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
39296533 |
agaattgtgatagctaaagtg |
39296513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University