View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14847_low_23 (Length: 223)
Name: NF14847_low_23
Description: NF14847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14847_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 30211959 - 30211751
Alignment:
| Q |
1 |
tggagaggaagttccttggaagttagaagacacatgacattggtacaacttgtgagttattgttgnnnnnnngtccctatattgttagatcaaacttcat |
100 |
Q |
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| T |
30211959 |
tggagaggaagttccttggaagttagaagacacatgaaattggtacaacttgtgagttattgtcttttatttgtctctatattgttagatcaaacttcat |
30211860 |
T |
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| Q |
101 |
acaaatgagttcatttttgttcgatgaaactatgcctaatagaaacacatcaaccctcaaaaaataagacttttactatattttacctttttgcatacat |
200 |
Q |
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||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||| |||| |
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| T |
30211859 |
acaaatgagttcatttttgttcgataaaactatgtctaatagaaacacatccaccctcaaaagataagactcttactatattttacctttttgcacacat |
30211760 |
T |
|
| Q |
201 |
gtgcctttg |
209 |
Q |
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||||||||| |
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| T |
30211759 |
gtgcctttg |
30211751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 151
Target Start/End: Original strand, 27970884 - 27970945
Alignment:
| Q |
90 |
tcaaacttcatacaaatgagttcatttttgttcgatgaaactatgcctaatagaaacacatc |
151 |
Q |
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| T |
27970884 |
tcaaactccatgcaaatgagttcgtttctgttcgataaaactatgcctactagaaacacatc |
27970945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 151
Target Start/End: Original strand, 28028153 - 28028214
Alignment:
| Q |
90 |
tcaaacttcatacaaatgagttcatttttgttcgatgaaactatgcctaatagaaacacatc |
151 |
Q |
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| T |
28028153 |
tcaaactccatgcaaatgagttcgtttctgttcgataaaactatgcctactagaaacacatc |
28028214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 151
Target Start/End: Original strand, 27895533 - 27895594
Alignment:
| Q |
90 |
tcaaacttcatacaaatgagttcatttttgttcgatgaaactatgcctaatagaaacacatc |
151 |
Q |
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| T |
27895533 |
tcaaactccatgcaaatgagttcgtttctattcgacaaaactatgcctactagaaacacatc |
27895594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 151
Target Start/End: Original strand, 27907772 - 27907833
Alignment:
| Q |
90 |
tcaaacttcatacaaatgagttcatttttgttcgatgaaactatgcctaatagaaacacatc |
151 |
Q |
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| T |
27907772 |
tcaaactccatgcaaatgagttcgtttctattcgacaaaactatgcctactagaaacacatc |
27907833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 151
Target Start/End: Original strand, 27954191 - 27954252
Alignment:
| Q |
90 |
tcaaacttcatacaaatgagttcatttttgttcgatgaaactatgcctaatagaaacacatc |
151 |
Q |
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||||||| ||| ||||||||||| ||| | ||||| |||||||||||| |||||||||||| |
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| T |
27954191 |
tcaaactccatgcaaatgagttcgtttctattcgacaaaactatgcctactagaaacacatc |
27954252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 38332339 - 38332284
Alignment:
| Q |
81 |
attgttagatcaaacttcatacaaatgagttcatttttgttcgatgaaactatgcc |
136 |
Q |
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| T |
38332339 |
attgtaagatcaaacttcatgcaaataagttgatttttgtttgataaaactatgcc |
38332284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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