View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14847_low_24 (Length: 212)
Name: NF14847_low_24
Description: NF14847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14847_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 49936000 - 49936182
Alignment:
| Q |
17 |
actaagatgcccagacattagccatttcaaaatgccttcctcttttccatcattaaggttgcgatcgctggctccaggcaatacatattcaccttgaagt |
116 |
Q |
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| T |
49936000 |
actaagatgcccagacattagccttttcaaaatgccttcctcttttccatcattaaggttgcgatcgctggatccaggcaatacatattcaccttgaagt |
49936099 |
T |
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| Q |
117 |
tcataatgactgttgctttgttcaaagataattttttcaatagtgatctgaacaatagcacatcaacagacattcagtataat |
199 |
Q |
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| T |
49936100 |
tcataatgactgttgctttgttcaaagataattttttcaatagtgatctgaacaatagcacatcaacagacattcagtataat |
49936182 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 90 - 172
Target Start/End: Complemental strand, 1912467 - 1912385
Alignment:
| Q |
90 |
ccaggcaatacatattcaccttgaagttcataatgactgttgctttgttcaaagataattttttcaatagtgatctgaacaat |
172 |
Q |
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| T |
1912467 |
ccaggcaaaacgtattcaccttgaagttcataatagctgtggttttgttgcaaaacagttttttcaatagtgatctgaacaat |
1912385 |
T |
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