View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14847_low_4 (Length: 502)
Name: NF14847_low_4
Description: NF14847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14847_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 9323185 - 9322779
Alignment:
| Q |
1 |
ctggttgctgattattgtcttgaccgatttatgactcaagctggtactactattgaatagattttctcttatggtgtcttaggttattgcgcacacgagt |
100 |
Q |
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|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9323185 |
ctggttgc-gattattgtcttgaccgacttatgactcaagctggtactactattgaatagattttctcttatggtgtcttaggttattgcgcacacgagt |
9323087 |
T |
|
| Q |
101 |
tagctgcttcaaagtagccaatgccttccttcaagtcagatgtctaaggttttggcgtgatacttttgaaacttttaaccagaagttgtgctggtgatgt |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9323086 |
tagctgcttcaaagaagccaatgccttccttcaagtcagatgtctaaggttttggcgtgatacttttgaaacttttaaccagaagttgtgctggtgatgt |
9322987 |
T |
|
| Q |
201 |
ggtaactggcgaggagggaggtgttttatcttacagattggttagattgcgagtagcagaaggtcgaggctccgaatgtttcgatgcaactttgatgtta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9322986 |
ggtaactggcgaggagggaggtgttttatcttacagattggttagattgcgagtagcagaaggtcgaggctccgaatgtttcgatgcaactttgatgtta |
9322887 |
T |
|
| Q |
301 |
gaaatgggaaatccagttgtagagaaggaaaagaatgaggtcttaggaatagtgattcgatgtattggatcggtttcttaaaggcctggtggctcatgct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9322886 |
gaaatgggaaatccagttgtagagaaggaaaagaatgaggtcttaggaatagtgattcgatgtattggatcggtttcttaaaggcctggtggctcatgct |
9322787 |
T |
|
| Q |
401 |
aactactt |
408 |
Q |
| |
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|||||||| |
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| T |
9322786 |
aactactt |
9322779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 7 - 389
Target Start/End: Original strand, 11423944 - 11424323
Alignment:
| Q |
7 |
gctgattattgtcttgaccgatttatgactcaagctggtactactattgaatagattttctcttatggtgtcttaggttattgcgcacacgagttagctg |
106 |
Q |
| |
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||||||||||||||| ||||| ||||||||||||||||||||| |||| ||||| | ||||||||||||||| |||||| |||||||||| |
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| T |
11423944 |
gctgattattgtcttcaccgacttatgactcaagctggtacta---ttgagcagattcttgacgccggtgtcttaggttatcgcgcaccagagttagctg |
11424040 |
T |
|
| Q |
107 |
cttcaaagtagccaatgccttccttcaagtcagatgtctaaggttttggcgtgatacttttgaaacttttaaccagaagttgtgctggtgatgtggtaac |
206 |
Q |
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|||| ||| ||||||||||||| ||||||||||||||||| | ||| ||||||||||||||| ||||||||||| |||| ||||||||||||||| |||| |
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| T |
11424041 |
cttccaagaagccaatgccttctttcaagtcagatgtctatgctttcggcgtgatacttttggaacttttaaccggaaggtgtgctggtgatgtgataac |
11424140 |
T |
|
| Q |
207 |
tggcgaggagggaggtgttttatcttacagattggtta-gattgcgagtagcagaaggtcgaggctccgaatgtttcgatgcaactttgatgttagaaat |
305 |
Q |
| |
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||| ||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
11424141 |
tggtgaggagggaggtgttg-atcttacagattggctaagattgcgagtagcagaaggtcgaggctcggaatgtttcgatgcaactttgatgtcggaaat |
11424239 |
T |
|
| Q |
306 |
gggaaatccagttgtagagaaggaaaagaatgaggtcttaggaatagtgattcgatgtattggatcggtttcttaaaggcctgg |
389 |
Q |
| |
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|||||||||||||||||| |||| || ||| |||||| ||||||||| |||||||||||| ||||||||||| |||||||||| |
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| T |
11424240 |
gggaaatccagttgtagaaaagggaatgaaggaggtcctaggaatagcaattcgatgtattcgatcggtttctgaaaggcctgg |
11424323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 97 - 353
Target Start/End: Complemental strand, 32304523 - 32304267
Alignment:
| Q |
97 |
gagttagctgcttcaaagtagccaatgccttccttcaagtcagatgtctaaggttttggcgtgatacttttgaaacttttaaccagaagttgtgctggtg |
196 |
Q |
| |
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|||||| ||||||| ||| || ||||||||||||||||||||||||||| | ||| || ||||| ||||| ||||||||||| |||| |||||| ||| |
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| T |
32304523 |
gagttaactgcttccaagaagacaatgccttccttcaagtcagatgtctttgttttcggtgtgatgctttttgaacttttaaccggaaggtgtgcttgtg |
32304424 |
T |
|
| Q |
197 |
atgtggtaactggcgaggagggaggtgttttatcttacagattggtta-gattgcgagtagcagaaggtcgaggctccgaatgtttcgatgcaactttga |
295 |
Q |
| |
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||||| ||||| | ||||||||||||||| ||||| |||||||| || || || |||||||||||||||||| ||| |||||||| ||||||||||||| |
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| T |
32304423 |
atgtgataactagtgaggagggaggtgttg-atcttgcagattggctaagactgtgagtagcagaaggtcgagtctcggaatgttttgatgcaactttga |
32304325 |
T |
|
| Q |
296 |
tgttagaaatgggaaatccagttgtagagaaggaaaagaatgaggtcttaggaatagt |
353 |
Q |
| |
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||| |||||||||||||| ||||||||| |||| || ||| |||||| |||||||||| |
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| T |
32304324 |
tgtcagaaatgggaaatctagttgtagaaaagggaatgaaggaggtcataggaatagt |
32304267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 228 - 373
Target Start/End: Complemental strand, 9330972 - 9330826
Alignment:
| Q |
228 |
atcttacagattggtta-gattgcgagtagcagaaggtcgaggctccgaatgtttcgatgcaactttgatgttagaaatgggaaatccagttgtagagaa |
326 |
Q |
| |
|
|||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||| | ||||||| || |
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| T |
9330972 |
atcttacagattggctaagattgcgagtagcataaggtcgaggctccgaatgtttcgatgcagctttgacgttagaaatgggaaatctaattgtagaaaa |
9330873 |
T |
|
| Q |
327 |
ggaaaagaatgaggtcttaggaatagtgattcgatgtattggatcgg |
373 |
Q |
| |
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|| || |||||||||| ||||||||| |||||||| |||| |||||| |
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| T |
9330872 |
gggaatgaatgaggtcctaggaatagcgattcgatatatttgatcgg |
9330826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 407 - 463
Target Start/End: Complemental strand, 9322744 - 9322688
Alignment:
| Q |
407 |
ttggtaccatcccatatttgtttagagcatggctttttaacatgtttgtattaacca |
463 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9322744 |
ttggtaccatcccatatttgtttagagcatggctttttaacatgtttgtattaacca |
9322688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 407 - 463
Target Start/End: Original strand, 11424415 - 11424471
Alignment:
| Q |
407 |
ttggtaccatcccatatttgtttagagcatggctttttaacatgtttgtattaacca |
463 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11424415 |
ttggtatcatcccatatttgtttagagcatggctttttaacatgtttgtattaacca |
11424471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 275 - 347
Target Start/End: Original strand, 11425636 - 11425708
Alignment:
| Q |
275 |
aatgtttcgatgcaactttgatgttagaaatgggaaatccagttgtagagaaggaaaagaatgaggtcttagg |
347 |
Q |
| |
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||||||| ||||| |||||||||||||||||||| |||||||||||||| |||| || ||| |||||| |||| |
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| T |
11425636 |
aatgttttgatgctactttgatgttagaaatggggaatccagttgtagaaaagggaatgaaggaggtcctagg |
11425708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 407 - 444
Target Start/End: Complemental strand, 9330791 - 9330754
Alignment:
| Q |
407 |
ttggtaccatcccatatttgtttagagcatggcttttt |
444 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||| |
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| T |
9330791 |
ttggtaccatcccatatttgtttagagcatgacttttt |
9330754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 460
Target Start/End: Original strand, 11425803 - 11425856
Alignment:
| Q |
407 |
ttggtaccatcccatatttgtttagagcatggctttttaacatgtttgtattaa |
460 |
Q |
| |
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|||||| |||| | ||||||||||| |||||||||||||| |||| |||||||| |
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|
| T |
11425803 |
ttggtatcatctcgtatttgtttagggcatggctttttaagatgtctgtattaa |
11425856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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