View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14847_low_6 (Length: 482)

Name: NF14847_low_6
Description: NF14847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14847_low_6
NF14847_low_6
[»] chr6 (6 HSPs)
chr6 (270-473)||(15278613-15278817)
chr6 (20-195)||(15278887-15279064)
chr6 (348-448)||(34517009-34517110)
chr6 (271-448)||(34513863-34514042)
chr6 (348-448)||(3510555-3510653)
chr6 (348-446)||(8910839-8910937)
[»] chr2 (3 HSPs)
chr2 (270-473)||(2039773-2039979)
chr2 (352-473)||(29962255-29962377)
chr2 (363-409)||(2584334-2584381)
[»] chr8 (4 HSPs)
chr8 (271-473)||(6820267-6820470)
chr8 (270-448)||(3896387-3896567)
chr8 (283-473)||(44669653-44669845)
chr8 (271-441)||(5536201-5536372)
[»] chr3 (3 HSPs)
chr3 (270-477)||(1312205-1312416)
chr3 (270-445)||(19933529-19933706)
chr3 (348-446)||(11034148-11034246)
[»] chr1 (2 HSPs)
chr1 (270-446)||(18154013-18154192)
chr1 (271-448)||(18902740-18902919)
[»] scaffold0172 (1 HSPs)
scaffold0172 (270-473)||(33738-33943)
[»] chr7 (9 HSPs)
chr7 (276-473)||(28384821-28385021)
chr7 (270-446)||(12527830-12528007)
chr7 (270-448)||(16422436-16422613)
chr7 (270-446)||(12502196-12502373)
chr7 (271-448)||(36018684-36018862)
chr7 (271-448)||(26262327-26262505)
chr7 (348-477)||(16484730-16484860)
chr7 (363-477)||(21267134-21267249)
chr7 (380-477)||(48185867-48185964)
[»] scaffold0003 (1 HSPs)
scaffold0003 (270-448)||(11148-11325)
[»] chr4 (2 HSPs)
chr4 (271-477)||(52945602-52945809)
chr4 (270-448)||(28653555-28653739)
[»] scaffold0655 (1 HSPs)
scaffold0655 (348-473)||(8334-8460)


Alignment Details
Target: chr6 (Bit Score: 140; Significance: 4e-73; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 270 - 473
Target Start/End: Complemental strand, 15278817 - 15278613
Alignment:
Q  270 cttctctttgaatttccaaaatagtaaattttacatcaaaaaa-tatattcctaataacaagaaacttagccnnnnnnnctacctaagactacacctagc 368  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||       ||||| |||||||||||||||    
T  15278817 cttctctttgaatttccaaaatagtaaattttacatcaaaaaaatatattcctaataacaagacacttagcctttttttctacccaagactacacctagc 15278718  T
Q  369 tggtcaagttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaatgtctaccaccgttttacttgcg 468  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||  |||||||| || ||||||||||||| |||||||||||||||||    
T  15278717 tggtcaagttctagatgcttgtgaaaagttttctcaacaaggctaataccattgtcagaatatataaaacctccaaatgtctgccaccgttttacttgcg 15278618  T
Q  469 tcttc 473  Q
    |||||    
T  15278617 tcttc 15278613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 20 - 195
Target Start/End: Complemental strand, 15279064 - 15278887
Alignment:
Q  20 aaggggcattgcatttcgatgctctagtgcgggaaaaggaagaaatggccagaaggatgaccaagatggaggctgagttggcagccacgaagaaaattgc 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  15279064 aaggggcattgcatttcgatgctctagtgcgggaaaaggaagaaatggccagaaggatgaccaagatggaggctgagttggcagccacgaagaaaactgc 15278965  T
Q  120 tacggaaaatgtgtaacgactcga--ttttannnnnnnngaatgttaattgacaaaattcttaatgaaaagatgaata 195  Q
    |||||||||||| |||| || |||  ||||         ||||||||||| |||||||||||||||||||||||||||    
T  15278964 tacggaaaatgtttaacaacccgatttttttttttttttgaatgttaattaacaaaattcttaatgaaaagatgaata 15278887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 348 - 448
Target Start/End: Original strand, 34517009 - 34517110
Alignment:
Q  348 ctacctaagactacacctagctggtcaa-gttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaat 446  Q
    ||||| |||||||||||||||||||||| || | |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34517009 ctacccaagactacacctagctggtcaaagtaccggatgcatgtgaaaagttttctcaacaaggctaataccagtgtcggaatatatcaagcctccaaat 34517108  T
Q  447 gt 448  Q
    ||    
T  34517109 gt 34517110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 271 - 448
Target Start/End: Original strand, 34513863 - 34514042
Alignment:
Q  271 ttctctttgaatttccaaaatagtaaattttacatcaaaa--aatatattcctaataacaagaaacttagccnnnnnnnctacct-aagactacacctag 367  Q
    |||||||||||||||||||||| ||||||||||| |||||  |  |||||||||||| ||||| | || | |       |||||  ||||||||||||||    
T  34513863 ttctctttgaatttccaaaataataaattttacaacaaaagtataatattcctaatatcaagacatttggtcttttt--ctaccccaagactacacctag 34513960  T
Q  368 ctggtcaa-gttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaatgt 448  Q
    |||||||| |||| |||||| ||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  34513961 ctggtcaaagttccggatgcatgtgaaatgttttctcaacaaggctaataccactgtcggaatatatcaagcctccaaatgt 34514042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 348 - 448
Target Start/End: Complemental strand, 3510653 - 3510555
Alignment:
Q  348 ctacctaagactacacctagctggtcaagttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaatg 447  Q
    ||||||||||||||||||||||    ||||||| ||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||    
T  3510653 ctacctaagactacacctagctca--aagttctagatgcttgtgaaaagttttctcaacaaggttaataccaatgtcggaatatatcaagcctccaaatg 3510556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 348 - 446
Target Start/End: Complemental strand, 8910937 - 8910839
Alignment:
Q  348 ctacctaagactacacctagctggtca-agttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaat 446  Q
    ||||| ||||||| ||||| ||||||| ||||||||||||||| |||||||||| |||||||||||||||| |||||   ||||||||||| ||||||||    
T  8910937 ctacccaagactaaacctatctggtcatagttctggatgcttgcgaaaagtttt-tcaacaaggctaatactagtgtcataatatatcaagtctccaaat 8910839  T

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Target: chr2 (Bit Score: 118; Significance: 5e-60; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 270 - 473
Target Start/End: Complemental strand, 2039979 - 2039773
Alignment:
Q  270 cttctctttgaatttccaaaatagtaaattttacatcaaaaa-atat-attcctaataacaagaaacttagccnnnnnnnctacctaagactacacctag 367  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||   ||| ||        ||||||||||||||||||||    
T  2039979 cttctctttgaatttccaaaatagtaaattttacatcaaaaatatattattcctaatagcaaggctcttggctttttttcctacctaagactacacctag 2039880  T
Q  368 ctggtcaa-gttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaatgtctaccaccgttttacttg 466  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||| | |||||||||||||||    
T  2039879 ctggtcaaagttctggatgcttgtgaaaagttttctcaacaaggttaataccagtgtcggaatatatcaagcctccgaatgtgtgccaccgttttacttg 2039780  T
Q  467 cgtcttc 473  Q
    |||||||    
T  2039779 cgtcttc 2039773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 352 - 473
Target Start/End: Original strand, 29962255 - 29962377
Alignment:
Q  352 ctaagactacacctagctggtcaa-gttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaatgtct 450  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||      
T  29962255 ctaagactacacctagctggtcaaagttctagatgcttgtgaaaagttttctcaacaaggctaataccagtgtcggaatatatcaagcctccgaatgtgc 29962354  T
Q  451 accaccgttttacttgcgtcttc 473  Q
     |||| |||||||||||||||||    
T  29962355 cccactgttttacttgcgtcttc 29962377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 409
Target Start/End: Original strand, 2584334 - 2584381
Alignment:
Q  363 cctagctggtca-agttctggatgcttgtgaaaagttttctcaacaag 409  Q
    |||||||||||| |||| ||||||||||||||||||||| ||||||||    
T  2584334 cctagctggtcatagttgtggatgcttgtgaaaagttttttcaacaag 2584381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 271 - 473
Target Start/End: Complemental strand, 6820470 - 6820267
Alignment:
Q  271 ttctctttgaatttccaaaatagtaaattttacatcaaaaa-ata-tattcctaataacaagaaacttagccnnnnnnnctacctaagactacacctagc 368  Q
    ||||||||||||||| ||||||||||||||||||| ||||| ||| ||||||||||||||||  ||||| ||       ||||| || |||||||||| |    
T  6820470 ttctctttgaatttctaaaatagtaaattttacataaaaaatataatattcctaataacaaggcacttaaccttttt--ctacccaacactacacctaac 6820373  T
Q  369 tggtcaa-gttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaatgtctaccaccgttttacttgc 467  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||    
T  6820372 tggtcaaagttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgtcggaatatatcaagcctccaaatgtgcaccaccgttttacttgc 6820273  T
Q  468 gtcttc 473  Q
    ||||||    
T  6820272 gtcttc 6820267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 270 - 448
Target Start/End: Original strand, 3896387 - 3896567
Alignment:
Q  270 cttctctttgaatttccaaaatagtaaattttacatcaaaaa-atat-attcctaataacaagaaacttagccnnnnnnnctacctaagactacacctag 367  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||| ||||   ||| |||       ||||| ||||||||||||||    
T  3896387 cttctctttgaatttccaaaatagtaaatttttcatcaaaaatatattattcctaatagcaaggctcttggcctttttt-ctacccaagactacacctag 3896485  T
Q  368 ctggtcaa-gttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaatgt 448  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3896486 ctggtcaaagttttggatgcttgtgaaaagttttctcaacaaggctaataccagtgtcggaatatatcaagcctccaaatgt 3896567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 283 - 473
Target Start/End: Complemental strand, 44669845 - 44669653
Alignment:
Q  283 ttccaaaatagtaaattttacatcaaaaa-atat-attcctaataacaagaaacttagccnnnnnnnctacctaagactacacctagctggtcaa-gttc 379  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||  |||   ||| |||       ||||| |||||||||||||||||||||| ||||    
T  44669845 ttccaaaatagtaaattttacatcaaaaatatattattcctaatagtaaggctcttggcctttttt-ctacccaagactacacctagctggtcaaagttc 44669747  T
Q  380 tggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaatgtctaccaccgttttacttgcgtcttc 473  Q
    ||||||||||||||||||||||||| ||| |||||||||| ||| ||||||||||||||||||||||||   ||||||||||||||||||||||    
T  44669746 tggatgcttgtgaaaagttttctcatcaaagctaataccactgtcggaatatatcaagcctccaaatgtgcgccaccgttttacttgcgtcttc 44669653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 271 - 441
Target Start/End: Original strand, 5536201 - 5536372
Alignment:
Q  271 ttctctttgaatttccaaaatagtaaattttacatcaaaaaatat-attcctaataacaagaaacttagccnnnnnnnctacctaagactacacctagct 369  Q
    ||||||||||||||||||||| || |||||||||| |||| |||| || ||||||||||||| |||| | |       || |  |||||||||||||||     
T  5536201 ttctctttgaatttccaaaatggtgaattttacataaaaatatattatccctaataacaagacactt-gacctttttccttctcaagactacacctagcc 5536299  T
Q  370 ggtcaa-gttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctc 441  Q
      |||| ||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||    
T  5536300 aatcaaagttgtggatgcttgtgaaaagttttttcaacaaggctaataccagtgtcggaatatatgaagcctc 5536372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 111; Significance: 8e-56; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 270 - 477
Target Start/End: Complemental strand, 1312416 - 1312205
Alignment:
Q  270 cttctctttgaatttccaaaatagtaaattttacatcaaaaa-atat-attcctaataacaagaaacttagccnnnnnnn-ctacctaagactacaccta 366  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||   ||| |||        ||||| |||||||||||||    
T  1312416 cttctctttgaatttccaaaatagtaaattttacatcaaaaatatattattcctaatagcaaggctcttggccttttttttctacccaagactacaccta 1312317  T
Q  367 gctggtcaa-gttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaatgtctaccaccgttttactt 465  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||| ||||||||    
T  1312316 gctggtcaaagttctagatgcttgtgaaaagttttctcaacaaggctaataccagtgtcggaatatatcaagcctccaaatgtgtgccaccattttactt 1312217  T
Q  466 gcgtcttcttct 477  Q
    | ||||||||||    
T  1312216 gtgtcttcttct 1312205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 270 - 445
Target Start/End: Complemental strand, 19933706 - 19933529
Alignment:
Q  270 cttctctttgaatttccaaaatagtaaattttacatcaaaaa-ata-tattcctaataacaagaaacttagccnnnnnnnctacctaagactacacctag 367  Q
    |||||| || |||||||||||||||||||||||||| ||||| ||| ||| ||||||||||||| | || |||       ||||| |||||||||||||     
T  19933706 cttctccttcaatttccaaaatagtaaattttacataaaaaatataatatccctaataacaagacaattggcctttttc-ctacccaagactacacctaa 19933608  T
Q  368 ctggtcaag-ttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaa 445  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19933607 ctggtcaaggttctggatgcttgtgaaaatttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaa 19933529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 348 - 446
Target Start/End: Original strand, 11034148 - 11034246
Alignment:
Q  348 ctacctaagactacacctagctggtcaa-gttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaat 446  Q
    ||||| ||||||||||||| |||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  11034148 ctacccaagactacacctaactggtcaaagttctggatacttgtgaaaagttt-ctcaacaaggctaataccagtgtcggaatatatcaagcctccaaat 11034246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 270 - 446
Target Start/End: Complemental strand, 18154192 - 18154013
Alignment:
Q  270 cttctctttgaatttccaaaatagtaaattttacatcaaaaaatatatt---cctaataacaagaaacttagccnnnnnnnctacctaagactacaccta 366  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||   ||||||||||||| |||| |||       ||||| |||||||||||||    
T  18154192 cttctctttgaatttccaaaatagtaaattttacataaaaaaatatattatccctaataacaagacacttggcctttttc-ctacccaagactacaccta 18154094  T
Q  367 gctggtcaa-gttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaat 446  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  18154093 gctggtcaaagttctggatgcttgtgaaaagttttgtcaacaaggctaataccagtgtcggaatatatcaagcctccaaat 18154013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 271 - 448
Target Start/End: Complemental strand, 18902919 - 18902740
Alignment:
Q  271 ttctctttgaatttccaaaatagtaaattttacatcaaaaa-ata-tattcctaataacaagaaacttagccnnnnnnnctacctaagactacacctagc 368  Q
    ||||| ||||||||||||||||||||||||||||| ||||| ||| ||| | ||||||||||| |||| |||       ||||| ||||||||||||| |    
T  18902919 ttctccttgaatttccaaaatagtaaattttacataaaaaatataatatccttaataacaagacacttggcctttttc-ctacccaagactacacctaac 18902821  T
Q  369 tggtcaag-ttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaatgt 448  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  18902820 tggtcaaggttctggatgcttgtggaaagttttctcaacaaggctaataccagtgtcggaatatatcaagcctccaaatgt 18902740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 106; Significance: 8e-53; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 270 - 473
Target Start/End: Original strand, 33738 - 33943
Alignment:
Q  270 cttctctttgaatttccaaaatagtaaattttacatcaaaaa-ata-tattcctaataacaagaaacttagccnnnnnnnctacctaagactacacctag 367  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||   ||| ||        ||||||||||||||||||||    
T  33738 cttctctttgaatttccaaaatagtaaattttacatcaaaaatatactattcctaatagcaaggctcttggc-tttttttctacctaagactacacctag 33836  T
Q  368 ctggtcaa-gttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaatgtctaccaccgttttacttg 466  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||| |   |||||||||||||||    
T  33837 ctggtcaaagttctggatgcttgtgaaaagttttctcaacaaggctgataccagtgtcggaatatatcaagcctccgaatatgcgccaccgttttacttg 33936  T
Q  467 cgtcttc 473  Q
    |||||||    
T  33937 cgtcttc 33943  T

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Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 276 - 473
Target Start/End: Complemental strand, 28385021 - 28384821
Alignment:
Q  276 tttgaatttccaaaatagtaaattttacatcaaaaa-atat-attcctaataacaagaaacttagccnnnnnnnctacctaagactacacctagctggtc 373  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||  |        ||||| ||||||||||||| ||||||    
T  28385021 tttgaatttccaaaatagtaaattttacatcaaaaatatattattcctaataacaagacacttgacttttttttctacccaagactacacctaactggtc 28384922  T
Q  374 aag-ttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaatgtctaccaccgttttacttgcgtctt 472  Q
    ||  |||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||   | |||||||||||||||||||    
T  28384921 aaaattctggttgcttgtgaaaagttttctcaacaaggctaataccagtgtcggaatataccaagcctccaaatgtgcgcaaccgttttacttgcgtctt 28384822  T
Q  473 c 473  Q
    |    
T  28384821 c 28384821  T

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Target: chr7; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 270 - 446
Target Start/End: Original strand, 12527830 - 12528007
Alignment:
Q  270 cttctctttgaatttccaaaatagtaaattttacatcaaaaaatat-attcctaataacaagaaacttagccnnnnnnnctacctaagactacacctagc 368  Q
    |||||||||||||||| |||||||| |||||||||| ||||  ||| || ||||||||||||| |||| |||       ||||| ||| |||||||||||    
T  12527830 cttctctttgaatttctaaaatagtgaattttacataaaaatctattatccctaataacaagatacttggcctttttc-ctacccaaggctacacctagc 12527928  T
Q  369 tggtcaa-gttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaat 446  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12527929 tggtcaaagttctggatgcttgtaaaaagttttctcaacaaggctaataccagtgtcggaatatatcaagcctccaaat 12528007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 270 - 448
Target Start/End: Complemental strand, 16422613 - 16422436
Alignment:
Q  270 cttctctttgaatttccaaaatagtaaattttacatcaaaaaatatatt---cctaataacaagaaacttagccnnnnnnnctacctaagactacaccta 366  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||| |   ||||||||||||| |||| |||       |||||||||||||||||||    
T  16422613 cttctccttgaatttccaaaatagtaaattttacataaaaaaatataatatccctaataacaagacactt-gcctttttc-ctacctaagactacaccta 16422516  T
Q  367 gctggtcaagttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaatgt 448  Q
    |||    ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  16422515 gctca--aagttctagatgcttgtgaaaagttttctcaacaaggctaataccagtgtcggaatatatcgagcctccaaatgt 16422436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 270 - 446
Target Start/End: Original strand, 12502196 - 12502373
Alignment:
Q  270 cttctctttgaatttccaaaatagtaaattttacatcaaaaaatatatt---cctaataacaagaaacttagccnnnnnnnctacctaagactacaccta 366  Q
    |||||||||||||||| |||||||| ||||||||||  |||||| ||||   ||||||||||||| |||| |||       ||||| |||||||||||||    
T  12502196 cttctctttgaatttctaaaatagtgaattttacat--aaaaatctattgtccctaataacaagatacttggcctttttc-ctacccaagactacaccta 12502292  T
Q  367 gctggtcaa-gttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaat 446  Q
    ||||||||| |||||||||| |||| |||||||||||||| |||||||||||||||||  |||||||||||||||||||||    
T  12502293 gctggtcaaagttctggatgattgtaaaaagttttctcaataaggctaataccagtgtcagaatatatcaagcctccaaat 12502373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 271 - 448
Target Start/End: Complemental strand, 36018862 - 36018684
Alignment:
Q  271 ttctctttgaatttccaaaatagtaaattttacatcaaaa--aatatattcctaataacaagaaacttagccnnnnnnnctacctaagactacacctagc 368  Q
    ||||||||||||||||||||||||||| |||||| |||||  |  |||||||||||| ||||| | || |||       ||||| ||||||||| |||||    
T  36018862 ttctctttgaatttccaaaatagtaaagtttacaacaaaagtataatattcctaatatcaagacatttggccttttt--ctacccaagactacatctagc 36018765  T
Q  369 tggtcaa-gttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaatgt 448  Q
    ||||||| |||  |||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||    
T  36018764 tggtcaaagtttcggatgcttgtgaaaagttttttcaacaaggctaatactagtgttagaatatatcaagcctccaaatgt 36018684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 271 - 448
Target Start/End: Original strand, 26262327 - 26262505
Alignment:
Q  271 ttctctttgaatttccaaaatagtaaattttacatcaaaa--aatatattcctaataacaagaaacttagccnnnnnnnctacctaagactacacctagc 368  Q
    ||||||| ||||||  |||||||||||||||||| |||||  |  |||||||||||| ||||| | || |||       ||||| ||||||||||||| |    
T  26262327 ttctcttcgaatttttaaaatagtaaattttacaacaaaagtataatattcctaatatcaagacatttggccttttt--ctacccaagactacacctaac 26262424  T
Q  369 tggtcaa-gttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaatgt 448  Q
    ||||||| |||| ||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  26262425 tggtcaaagttccggatgcttgtgaaaatttttctcaacaaggctaatactagtgtcggaatatatcaagcctccaaatgt 26262505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 348 - 477
Target Start/End: Complemental strand, 16484860 - 16484730
Alignment:
Q  348 ctacctaagactacacctagctggtca-agttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaat 446  Q
    ||||| |||| || |||||||||| || ||||  ||||||||| |||||||||||||| |||||||||||||| ||| ||||| ||||||||||||||||    
T  16484860 ctacccaagaataaacctagctggccatagtttcggatgcttgcgaaaagttttctcatcaaggctaataccactgtcggaatttatcaagcctccaaat 16484761  T
Q  447 gtctaccaccgttttacttgcgtcttcttct 477  Q
    ||  ||||||| |||||||||||||||||||    
T  16484760 gtgcaccaccgctttacttgcgtcttcttct 16484730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 363 - 477
Target Start/End: Original strand, 21267134 - 21267249
Alignment:
Q  363 cctagctggtca-agttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaatgtctaccaccgtttt 461  Q
    ||||| |||||| |||| |||||||||||||||||||||||||||||| ||||||| |||||  ||| |||  ||||||||||||||  ||||| ||||     
T  21267134 cctagttggtcatagttgtggatgcttgtgaaaagttttctcaacaagactaatactagtgtcagaaaatagtaagcctccaaatgtgcaccactgtttc 21267233  T
Q  462 acttgcgtcttcttct 477  Q
    ||||| | ||||||||    
T  21267234 acttgtgccttcttct 21267249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 380 - 477
Target Start/End: Original strand, 48185867 - 48185964
Alignment:
Q  380 tggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaatgtctaccaccgttttacttgcgtcttcttct 477  Q
    ||||||||||||||||||||||| |||||| |||||||||||||  ||| |||  ||| ||||||||||  ||||| |||| ||||| | ||||||||    
T  48185867 tggatgcttgtgaaaagttttcttaacaagactaataccagtgtcagaaaatagtaagactccaaatgtgcaccactgtttcacttgtgccttcttct 48185964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 270 - 448
Target Start/End: Complemental strand, 11325 - 11148
Alignment:
Q  270 cttctctttgaatttccaaaatagtaaattttacatcaaaaaatatatt---cctaataacaagaaacttagccnnnnnnnctacctaagactacaccta 366  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||| |   ||||||||||||| |||| |||       |||||||||||||||||||    
T  11325 cttctccttgaatttccaaaatagtaaattttacataaaaaaatataatatccctaataacaagacactt-gcctttttc-ctacctaagactacaccta 11228  T
Q  367 gctggtcaagttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaatgt 448  Q
    |||    ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  11227 gctca--aagttctagatgcttgtgaaaagttttctcaacaaggctaataccagtgtcggaatatatcgagcctccaaatgt 11148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 271 - 477
Target Start/End: Complemental strand, 52945809 - 52945602
Alignment:
Q  271 ttctctttgaatttccaaaatagtaaattttacatcaaaaa-ata-tattcctaataacaagaaacttagccnnnnnnnctacctaagactacacctagc 368  Q
    ||||||||||||||||||||| ||||||||||| | ||||| ||| ||||||||||||||||| ||||  ||       |||||||| ||||||| |||     
T  52945809 ttctctttgaatttccaaaattgtaaattttacgtaaaaaatataatattcctaataacaagacacttgaccttttt--ctacctaatactacacttagg 52945712  T
Q  369 tggtc-aagttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaatgtctaccaccgttttacttgc 467  Q
    | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||  || || |||||||||||||||||  |||||| ||| || |||    
T  52945711 tcgtcgaagttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgtcagagtaaatcaagcctccaaatgtgcaccaccatttcacgtgc 52945612  T
Q  468 gtcttcttct 477  Q
    ||||||||||    
T  52945611 gtcttcttct 52945602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 270 - 448
Target Start/End: Original strand, 28653555 - 28653739
Alignment:
Q  270 cttctctttgaatttccaaaatagtaaattttacatcaaaaaatatatt---cctaataacaagaaacttagccnnnnnnnctacctaagactacaccta 366  Q
    |||||||||||||||| ||| ||||||||||||||| ||||||||||||   ||||||||||||| |||| |||       ||||| |||||||||||||    
T  28653555 cttctctttgaatttctaaagtagtaaattttacat-aaaaaatatattatccctaataacaagacacttggcctttttc-ctacccaagactacaccta 28653652  T
Q  367 gct----ggtcaa-gttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaatgt 448  Q
    |||    |||||| ||||||||||||||||||||||||| | |||||||||||||||| ||| |||||||||||| |||||||||||    
T  28653653 gctagctggtcaaagttctggatgcttgtgaaaagtttttttaacaaggctaataccattgtcggaatatatcaaacctccaaatgt 28653739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 348 - 473
Target Start/End: Complemental strand, 8460 - 8334
Alignment:
Q  348 ctacctaagactacacctagctggtca-agttctggatgcttgtgaaaagttttctcaacaaggctaataccagtgttggaatatatcaagcctccaaat 446  Q
    ||||| |||| || ||||| ||||||| ||||| ||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||| ||| ||||    
T  8460 ctacccaagagtaaacctaactggtcatagttccggatgcttgtgaaaagttttctcaagaaggctaatatcagtgtcggaatatatcaagtctctaaat 8361  T
Q  447 gtctaccaccgttttacttgcgtcttc 473  Q
    ||  |||||||||||||||||||||||    
T  8360 gtgcaccaccgttttacttgcgtcttc 8334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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