View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14848_low_2 (Length: 344)
Name: NF14848_low_2
Description: NF14848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14848_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 8e-83; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 34289354 - 34289525
Alignment:
| Q |
15 |
aattcaagtttgttacactcaaaccaatgtaatgttagcactttaatataattttttcttatataaaaatataaataccaatgcattaaattttagcaaa |
114 |
Q |
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| T |
34289354 |
aatttaagtttgttacactcaaaccaatgtaatgttggcactttaatataattttttcttatataaaaatataaataccaatgcattaaattttagcaaa |
34289453 |
T |
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| Q |
115 |
aatcaaatcgaggggtcatttgtattattgataaaacactaaaatcaattccaaataaaagtctttcacaag |
186 |
Q |
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| T |
34289454 |
aatcaaatcgaggggtcatttgtattattgataaaacagtaaaatcaattccaaataaaagtcttacacaag |
34289525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 252 - 344
Target Start/End: Original strand, 34289591 - 34289683
Alignment:
| Q |
252 |
ccttgtttcaaacaaacacaacactttcaaaggttcattaacatatcaataactccaaattagttgaagcttttggaattgtcagcaaagatc |
344 |
Q |
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| T |
34289591 |
ccttgtttcaaacaaacacaacactttcaaaggttcattaacatatcaataactccaaattagttgaagcttttggaattgtcagcaaagatc |
34289683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 252 - 344
Target Start/End: Original strand, 34301978 - 34302070
Alignment:
| Q |
252 |
ccttgtttcaaacaaacacaacactttcaaaggttcattaacatatcaataactccaaattagttgaagcttttggaattgtcagcaaagatc |
344 |
Q |
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| T |
34301978 |
ccttgtttcaaacaaacacaacactttcaaaggttcattaacatatcaataactccaaattagttgaagcttttggaattgtcagtaaagatc |
34302070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 16 - 175
Target Start/End: Original strand, 34301739 - 34301900
Alignment:
| Q |
16 |
attcaagtttgttacactcaaaccaatgtaatgttagcactttaatataattttttcttatataaaaatataaataccaatgcat---taaattttagca |
112 |
Q |
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| T |
34301739 |
attcaagcttgttacacgcaaaccaatgcaatgttgccatttcactataattttt-cttatataaaaatataaatacgaatgcataaataaatcttagta |
34301837 |
T |
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| Q |
113 |
aaaatcaaatcgaggggtcatttgtattattgataaaacactaaaatcaattccaaataaaag |
175 |
Q |
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| T |
34301838 |
aaaatcaaattgaagggtcgttagtttaattgataaaacactaaaatcaattccaaataaaag |
34301900 |
T |
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