View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14848_low_3 (Length: 239)
Name: NF14848_low_3
Description: NF14848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14848_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 5287380 - 5287150
Alignment:
| Q |
1 |
aaagacggaggaaaaatgttttagtttatattcaatattatgttggctatgtcaggatcaagatagctcaccgtaattttcaaaagctacacactgtagc |
100 |
Q |
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| T |
5287380 |
aaagacggaggaaaaatgttttagtctatgttcgatattatgttggctatgccaggatcaagatagctcaccgtgattttcaaaagctacacattatagc |
5287281 |
T |
|
| Q |
101 |
ttttacatagttaggatggatcgtcgtgatttcaacatatctactgtgatatcaaacataatagtgaatcaccattttaatacttcaaatagtaggaatc |
200 |
Q |
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||||| | ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
5287280 |
ttttataaagttaggatggatcgtcgtgattccaacatatctactgtgataccaaacataatagtgaatcgccattttagtacttcaaatagtaggaatc |
5287181 |
T |
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| Q |
201 |
aaataatttgatctctcaatgtatgaagtga |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
5287180 |
aaataatttgatctctcaatgtatgaagtga |
5287150 |
T |
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