View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14849_high_1 (Length: 472)
Name: NF14849_high_1
Description: NF14849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14849_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 20 - 459
Target Start/End: Complemental strand, 32267846 - 32267408
Alignment:
| Q |
20 |
tacaaatatgattcttcatgaatagttttggagaatggataaaagtgttcatatatgtagagtgtagcaagataaattacggtagacatatttttatcat |
119 |
Q |
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| T |
32267846 |
tacaaatatgattcttcatgaatagttttggagaatggataaaagtgttcatatatgtagagtgtagcaagataaattacggtagacatatttttatcat |
32267747 |
T |
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| Q |
120 |
tacatattcggtggatgtaaagaattgnnnnnnnnnnnnnnnnncctaccgtacgtgggttctaaaattcggcacttttgatagtacattgaaacgttgg |
219 |
Q |
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| T |
32267746 |
tacatattcggtggatgtaaagaatt-ttttattttttatttttcctac----cgtgggttctaaaattcggcagttttgatagtacattgaaacgttgg |
32267652 |
T |
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| Q |
220 |
gtcatggtaaaatttcagtcctaaaatttgatgtgtcatttattggatgtcatttggtttgtacctaacaaaggtgtgatcg--nnnnnnnnaatataag |
317 |
Q |
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| T |
32267651 |
gtcatggtaaaatttcagtcctaaaatttgatgtgtcatttattggatgtcatttggttggtacctaacaaaggtgtgatcgttttttttttaatataag |
32267552 |
T |
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| Q |
318 |
aaaccactttattaagaagaatgcaagacatattcaatctcaaattaaaccagtgtgcagactttatagtcaaactaggagcttcaaatgatgatgatct |
417 |
Q |
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| T |
32267551 |
aaaccactttattaagaagaatgcaagacatattcaatctcaaattaaaccggtgtgcatactttgtagccaaactaggagcttcaaatgatgatgatct |
32267452 |
T |
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| Q |
418 |
gactattcactcc--caccctctagagggccttcttcctttgct |
459 |
Q |
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| T |
32267451 |
gactaatcactcccacaccatccagagggccttcttcctttgct |
32267408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 34 - 138
Target Start/End: Complemental strand, 32271939 - 32271836
Alignment:
| Q |
34 |
ttcatgaatagttttggagaatggataaaagtgttcatatatgta--gagtgtagcaagataaattacggtagacatatttttatcattacatattcggt |
131 |
Q |
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| T |
32271939 |
ttcatgaata-ttttggagaatggataaaagggttcatttatgtattgagtgtagcaagataaattattgtatacatatttttatc--tacatattcggt |
32271843 |
T |
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| Q |
132 |
ggatgta |
138 |
Q |
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| T |
32271842 |
ggatgta |
32271836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 173 - 241
Target Start/End: Complemental strand, 32271809 - 32271744
Alignment:
| Q |
173 |
cgtgggttctaaaattcggcacttttgatagtacattgaaacgttgggtcatggtaaaatttcagtcct |
241 |
Q |
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| T |
32271809 |
cgtgggttctaaaattcggcacttttgata---cattcaaacgttgggccatggtaaaatttcagtcct |
32271744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 257
Target Start/End: Original strand, 14446615 - 14446684
Alignment:
| Q |
185 |
aattcggcacttttgatagtacattgaaacgttgggtcatggtaaaatttcagtcctaaaatttgatgtgtca |
257 |
Q |
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| T |
14446615 |
aattcggcacttatgata---cattcaaacgttggaccatggtaaaatttcagtccttcaatttgaggtgtca |
14446684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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