View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14849_high_13 (Length: 224)
Name: NF14849_high_13
Description: NF14849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14849_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 35314180 - 35314384
Alignment:
| Q |
1 |
acatttccacgtgcattcgtaaatcagataccctctgatcaagattggacacttcagattaaaactcgatagtttaaattataaaatnnnnnnntcaaat |
100 |
Q |
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| T |
35314180 |
acatttccgcgtgcattcgtaaatcagagaccctctgattaagattggacactccagattaaaactcgatagtttaaattataaaataaaaaa-tcaaat |
35314278 |
T |
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| Q |
101 |
atgtattttcttgaaatcaagatcagatggccaatatcaacatcaatgtgtgttttgattgactgcagagaatccagatttctaaatcaaaacaggcccc |
200 |
Q |
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| T |
35314279 |
atgtattttcttgaaatcaagatcagatggccaatatcaacatcaatgtgtgttttgattgaccgcagagaatccagatttctaaatcaaaacaggcccc |
35314378 |
T |
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| Q |
201 |
ttaaac |
206 |
Q |
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|||||| |
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| T |
35314379 |
ttaaac |
35314384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 87
Target Start/End: Original strand, 38696059 - 38696088
Alignment:
| Q |
58 |
attaaaactcgatagtttaaattataaaat |
87 |
Q |
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| T |
38696059 |
attaaaactcgatagtttaaattataaaat |
38696088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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