View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14849_high_4 (Length: 427)
Name: NF14849_high_4
Description: NF14849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14849_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 15 - 416
Target Start/End: Original strand, 5434461 - 5434870
Alignment:
| Q |
15 |
acaatgaatttccacacttgaatatggatgaaaaatgtcaaaacccttttgtagaacaacattaaagcacatgaaaagaacagcctgtcttccttcatgg |
114 |
Q |
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| T |
5434461 |
acaatgaatttccaaacttgaatatggatgaaaaatgtcaaaacccttttgtagaacaacattaaagcacatgaaaagaacagcctgtcttccttcatgg |
5434560 |
T |
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| Q |
115 |
aaagcaaaatcagaaacaatcaacaatgaaagcaaatatagaaaatagcctaaaacttaattctttttaatgcagaaaaaccacaacaccattgacagct |
214 |
Q |
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| T |
5434561 |
aaagcaaaatcagaaacaatcaacaatgaaagcaaatatagaaaatagcctaaaacttaattctttttaatgcagaaaaaccacaacaccattgacagct |
5434660 |
T |
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| Q |
215 |
catagtctaaattttccagggaga-----aaacatatcattaaagcttacaacagcttaagcataagatcacaatctagcaaggatgtgttcttaagagc |
309 |
Q |
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| T |
5434661 |
catagtctaaattttccagggagaaaactaaacatatcattaaagcttacaacagcttaagcataagatcataatctagcaaggatgtgttcttaagagc |
5434760 |
T |
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| Q |
310 |
catatccaaaataagaatcaaacaaaagaaaccatg---aatacaataaaactttttataaacctcttattcttttgaagaatctagcctcctgttgttt |
406 |
Q |
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| T |
5434761 |
catatccaaaataagaatcaaacaaaagaaaccatgaataatacaataaaactttttccaaacctcttattcttttgaagaatctagcctcctgttgttt |
5434860 |
T |
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| Q |
407 |
ccacaggttc |
416 |
Q |
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| T |
5434861 |
ccacaggttc |
5434870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 536151 - 536236
Alignment:
| Q |
145 |
agcaaatatagaaaatagcctaaaacttaattctttttaatgcagaaaaaccacaacaccattgacagctcatagtctaaattttc |
230 |
Q |
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| T |
536151 |
agcaaatatagcaaagagtctaaaacttcattgtttttagtgcagaaaaaccacaacacccttgccaaatcatagaataaattttc |
536236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 193
Target Start/End: Complemental strand, 555385 - 555311
Alignment:
| Q |
120 |
aaaatcagaaacaatcaacaatgaaagcaaatatagaaaatagcctaaaa-cttaattctttttaatgcagaaaa |
193 |
Q |
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|||||||||| ||| |||||| | ||||||||| ||||| || |||||| ||| |||||||||||||||||||| |
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| T |
555385 |
aaaatcagaagcaaacaacaaaggtagcaaatatggaaaacaggctaaaaacttcattctttttaatgcagaaaa |
555311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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