View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14849_high_6 (Length: 384)
Name: NF14849_high_6
Description: NF14849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14849_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 31576257 - 31576625
Alignment:
| Q |
1 |
ttcactggtttaggaatgaggtcattgaatgaaactcaattggatatttcaaattagatacttcaatagtagcttgacaaatatgaagaggttgttgcgg |
100 |
Q |
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| T |
31576257 |
ttcactggtttaggaatgaggtcattgaatgaaactcaattggatatttcaaattagatacttcaatagtagcttgacaaatatgaagaggttgttacgg |
31576356 |
T |
|
| Q |
101 |
ttaacttgcaaattaagctgcaaatcttacacaaccattaaagcttattatggtaaatcttttaagttctgatagccttctctttttaatgtttgatgca |
200 |
Q |
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| T |
31576357 |
ttaacttgcaaattaagctgcaaatcttacacaaccattaaagcttattatggtaaatcttttgagttctgatagccttctctttttaatgtttgatgca |
31576456 |
T |
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| Q |
201 |
gacatcaccggttgttgatacttgatagatattcagtaatgacataggaaaaaacagtgaaagataaagacatcaaaagatgccaaatagctatagactt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31576457 |
gacatcaccggttgttgatacttgatagatattcagtaatgacataggaaaaaacagtgaaagataaagacatcaaaagatgccaaatagctatagactt |
31576556 |
T |
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| Q |
301 |
tagccagaaactacatatttgccaacttaacctttctcatttgtttatccttgcatatagctagttttt |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31576557 |
tagccagaaactacatatttgccaacttaacctttctcatttgtttatccttgcatatagctagttttt |
31576625 |
T |
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