View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14849_low_1 (Length: 832)
Name: NF14849_low_1
Description: NF14849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14849_low_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 566 - 814
Target Start/End: Original strand, 258058 - 258306
Alignment:
| Q |
566 |
ttttcatcaataatttgattgactgaaattttcatatttctaatgtttgtagtctcagtcccaaacaaaagatgatgattctgttcagcatgtggaattt |
665 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
258058 |
ttttcatcaataatttgattgactgaaattttcatatttctaatgtttgcagtctcagtcccaaacaaaagatgatgattctgttcagcatgtggaattt |
258157 |
T |
|
| Q |
666 |
gcttctggaaatgtgcaacttattactaccaaagaatcttggaaccaaacgctagaacaagcaaggggagatagaaaaattgtaatttttactgcttatt |
765 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
258158 |
gcttctggaaatgtgcaacttattactaccaaagaatcttggaaccaaacgctagaacaagcaaggggagatagaaaaattgtaatttttactgcttatt |
258257 |
T |
|
| Q |
766 |
taatttgtagcacagcattgttaaatgttatgtaaagacttgttgccat |
814 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
258258 |
taatttgtagcacagcattattaaatgttatgtaaagacttgttgccat |
258306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 566 - 814
Target Start/End: Complemental strand, 657863 - 657615
Alignment:
| Q |
566 |
ttttcatcaataatttgattgactgaaattttcatatttctaatgtttgtagtctcagtcccaaacaaaagatgatgattctgttcagcatgtggaattt |
665 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
657863 |
ttttcatcaataatttgattgactgaaattttcatatttctaatgtttgcagtctcagtcccaaacaaaagatgatgattctgttcagcatgtggaattt |
657764 |
T |
|
| Q |
666 |
gcttctggaaatgtgcaacttattactaccaaagaatcttggaaccaaacgctagaacaagcaaggggagatagaaaaattgtaatttttactgcttatt |
765 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
657763 |
gcttctggaaatgtgcaacttattactaccaaagaatcttggaaccaaacgctagaacaagcaaggggagatagaaaaattgtaatttttactgcttatt |
657664 |
T |
|
| Q |
766 |
taatttgtagcacagcattgttaaatgttatgtaaagacttgttgccat |
814 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
657663 |
taatttgtagcacagcattattaaatgttatgtaaagacttgttgccat |
657615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 566 - 814
Target Start/End: Complemental strand, 843598 - 843350
Alignment:
| Q |
566 |
ttttcatcaataatttgattgactgaaattttcatatttctaatgtttgtagtctcagtcccaaacaaaagatgatgattctgttcagcatgtggaattt |
665 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
843598 |
ttttcatcaataatttgattgactgaaattttcatatttctaatgtttgcagtctcagtcccaaacaaaagatgatgattctgttcagcatgtggaattt |
843499 |
T |
|
| Q |
666 |
gcttctggaaatgtgcaacttattactaccaaagaatcttggaaccaaacgctagaacaagcaaggggagatagaaaaattgtaatttttactgcttatt |
765 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
843498 |
gcttctggaaatgtgcaacttattactaccaaagaatcttggaaccaaacgctagaacaagcaaggggagatagaaaaattgtaatttttactgcttatt |
843399 |
T |
|
| Q |
766 |
taatttgtagcacagcattgttaaatgttatgtaaagacttgttgccat |
814 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
843398 |
taatttgtagcacagcattattaaatgttatgtaaagacttgttgccat |
843350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 243 - 501
Target Start/End: Original strand, 256944 - 257194
Alignment:
| Q |
243 |
atatgatattcattcattcattcattttaagatttaatgtaaatattttgttcttgcagtcttcacttcatggggaattgtgtggctaaggttagaatgt |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
256944 |
atatgatattcattcattcattcattttaagatttaatgtaaatattttgttcttgcagtcttcacttcatggggaattgtgtggctaaggttagaatgt |
257043 |
T |
|
| Q |
343 |
tattcatttattgattcacactaacaatttaaaccatcattcatatgccgtgtgcgcgcgtgtgtatcaatatccatcattcatagggactgtatctgta |
442 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
257044 |
tattcatttattgattcacactaacaatttaaaccatcattcatatgccgtgt----gcgtgtgtatcaatatcca----tcatagggactgtatctgta |
257135 |
T |
|
| Q |
443 |
gatagttaagttcaaagtttttacctgtttgaaaactagctatcatagtgctacaacaa |
501 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
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| T |
257136 |
gatagttaagttcaaagtttttacctgtttgaaaactagctatcatagtgctacaacaa |
257194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 243 - 501
Target Start/End: Complemental strand, 658976 - 658726
Alignment:
| Q |
243 |
atatgatattcattcattcattcattttaagatttaatgtaaatattttgttcttgcagtcttcacttcatggggaattgtgtggctaaggttagaatgt |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
658976 |
atatgatattcattcattcattcattttaagatttaatgtaaatattttgttcttgcagtcttcacttcatggggaattgtgtggctaaggttagaatgt |
658877 |
T |
|
| Q |
343 |
tattcatttattgattcacactaacaatttaaaccatcattcatatgccgtgtgcgcgcgtgtgtatcaatatccatcattcatagggactgtatctgta |
442 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
658876 |
tattcatttattgattcacactaacaatttaaaccatcattcatatgccgtgt----gcgtgtgtatcaatatcca----tcatagggactgtatctgta |
658785 |
T |
|
| Q |
443 |
gatagttaagttcaaagtttttacctgtttgaaaactagctatcatagtgctacaacaa |
501 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
658784 |
gatagttaagttcaaagtttttacctgtttgaaaactagctatcatagtgctacaacaa |
658726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 243 - 501
Target Start/End: Complemental strand, 844712 - 844462
Alignment:
| Q |
243 |
atatgatattcattcattcattcattttaagatttaatgtaaatattttgttcttgcagtcttcacttcatggggaattgtgtggctaaggttagaatgt |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
844712 |
atatgatattcattcattcattcattttaagatttaatgtaaatattttgttcttgcagtcttcacttcatggggaattgtgtggctaaggttagaatgt |
844613 |
T |
|
| Q |
343 |
tattcatttattgattcacactaacaatttaaaccatcattcatatgccgtgtgcgcgcgtgtgtatcaatatccatcattcatagggactgtatctgta |
442 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
844612 |
tattcatttattgattcacactaacaatttaaaccatcattcatatgccgtgt----gcgtgtgtatcaatatcca----tcatagggactgtatctgta |
844521 |
T |
|
| Q |
443 |
gatagttaagttcaaagtttttacctgtttgaaaactagctatcatagtgctacaacaa |
501 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
844520 |
gatagttaagttcaaagtttttacctgtttgaaaactagctatcatagtgctacaacaa |
844462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 256720 - 256887
Alignment:
| Q |
19 |
tcacattcattcccaaattgcaatttcaatactcttctcaacgctacgctggtgagtttctcttctctttccctaaatttcataatctcaaattaaat-- |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
256720 |
tcacattcattcccaaattgcaatttcaatactcttctcaacgctacgctggtgagtttctcttctctttccctaaatttcataatctcaaattaaatct |
256819 |
T |
|
| Q |
117 |
------------ttcccttttaattccagaaattatattagaatagaaacaattccgatcatccttcc |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
256820 |
cattttgcttccttcccttttaattccagaaattatattagaatagaaacaattccgatcatccttcc |
256887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 659200 - 659033
Alignment:
| Q |
19 |
tcacattcattcccaaattgcaatttcaatactcttctcaacgctacgctggtgagtttctcttctctttccctaaatttcataatctcaaattaaat-- |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
659200 |
tcacattcattcccaaattgcaatttcaatactcttctcaacgctacgctggtgagtttctcttctctttccctaaatttcataatctcaaattaaatct |
659101 |
T |
|
| Q |
117 |
------------ttcccttttaattccagaaattatattagaatagaaacaattccgatcatccttcc |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
659100 |
cattttgcttccttcccttttaattccagaaattatattagaatagaaacaattccgatcatccttcc |
659033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 844936 - 844769
Alignment:
| Q |
19 |
tcacattcattcccaaattgcaatttcaatactcttctcaacgctacgctggtgagtttctcttctctttccctaaatttcataatctcaaattaaat-- |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
844936 |
tcacattcattcccaaattgcaatttcaatactcttctcaacgctacgctggtgagtttctcttctctttccctaaatttcataatctcaaattaaatct |
844837 |
T |
|
| Q |
117 |
------------ttcccttttaattccagaaattatattagaatagaaacaattccgatcatccttcc |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
844836 |
cattttgcttccttcccttttaattccagaaattatattagaatagaaacaattccgatcatccttcc |
844769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 522 - 556
Target Start/End: Complemental strand, 257237 - 257203
Alignment:
| Q |
522 |
ttctcttagcctaattaatttgatgacccaataag |
556 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |
|
|
| T |
257237 |
ttctcttagcctaattaatgtgatgacccaataag |
257203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 522 - 556
Target Start/End: Original strand, 658683 - 658717
Alignment:
| Q |
522 |
ttctcttagcctaattaatttgatgacccaataag |
556 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |
|
|
| T |
658683 |
ttctcttagcctaattaatgtgatgacccaataag |
658717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 522 - 556
Target Start/End: Original strand, 844419 - 844453
Alignment:
| Q |
522 |
ttctcttagcctaattaatttgatgacccaataag |
556 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |
|
|
| T |
844419 |
ttctcttagcctaattaatgtgatgacccaataag |
844453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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