View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14849_low_11 (Length: 383)
Name: NF14849_low_11
Description: NF14849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14849_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 7 - 367
Target Start/End: Complemental strand, 45280548 - 45280191
Alignment:
| Q |
7 |
tgagatatctcctttaccatccaagatagtgacactctaagcctctaaagtgtttttaacaccatttttatattcatttctttctgcaaaatatattgcg |
106 |
Q |
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| T |
45280548 |
tgagatatctcctttaccatccaagatagtgacactctaagcctctaaagtgtttttaacaccatttttatattcatttctttctgcaaaaaatattgag |
45280449 |
T |
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| Q |
107 |
aaggaaaatggataaagctatgactaaacttggaagcttttggatctccaagaaagccaaggaagagatttcccacataaccaacgacttatctgtgagt |
206 |
Q |
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| T |
45280448 |
aaggaaaatggataaagctatgactaaacttggaagcttttggatctccaagaaagccaaggaagagatttcccacataaccaacgacttatctgtgagc |
45280349 |
T |
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| Q |
207 |
ctcttatttctttttcatttgttcaagaccatatttaactcttaaannnnnnnattgtttctgagttatgtctattttggataaatgacttctaaaatac |
306 |
Q |
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| T |
45280348 |
ctcttacttctttttcatttgttcaagaccatatttaaatcttaaa-ttttttattgtt--tgagttatgtctattttggataaatggcttctaaaatac |
45280252 |
T |
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| Q |
307 |
taagaatataagatttgataatagaagtagcagagtcttatgttcttggaatcttgaatat |
367 |
Q |
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| T |
45280251 |
taagaatataagatttgataatagaagtagcagagtcttatgttcttggaatcttgaatat |
45280191 |
T |
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