View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14849_low_12 (Length: 368)
Name: NF14849_low_12
Description: NF14849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14849_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 351
Target Start/End: Complemental strand, 13135249 - 13134912
Alignment:
| Q |
18 |
aatatcaaactgaattaatagttttattctatgctaatannnnnnnncttataaaaaatttatggtcataaatcatactcacatatagacaactcatgct |
117 |
Q |
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| T |
13135249 |
aatatcaaactgaattaatagttttattctatgctaatattttttttcttataaaaaatttatggtcataaatcatactcacatatagacaactcatgct |
13135150 |
T |
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| Q |
118 |
tcttcctcgtgaacttagctaagtgttttggagttccaacgtttgtagcttttgctaagtgcgtgtacctggtaaattttcaataagacctataacatga |
217 |
Q |
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| T |
13135149 |
tcgtcctcgtgagcttagctaggtgttttggagttccaatgtctgtagcttttgctaagtgcgtgtacctggtaaattttcaataagacctataacatga |
13135050 |
T |
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| Q |
218 |
cctaaatccttttgcgactctgtagccatgcatgctttgactc--tatctaaattgttaacattatctaaacatt--tgtgattatgatttttccatttc |
313 |
Q |
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| T |
13135049 |
cctaaatccttttgcgactctgtagccatgcatgctttgactctttatctaaattgttaacattatctaaacatttatgtgattatgatttttccatttc |
13134950 |
T |
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| Q |
314 |
ctcttacaatgaagcttgctacattgcctcacatctta |
351 |
Q |
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| T |
13134949 |
ctcttacaatgaagcttgctacattgcctcacaactta |
13134912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 66 - 119
Target Start/End: Complemental strand, 13123411 - 13123354
Alignment:
| Q |
66 |
ttataaaaaatttatggtcataaatcatac----tcacatatagacaactcatgcttc |
119 |
Q |
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| T |
13123411 |
ttataaaaaatgtatggtcataaatcatacatactcacatatagacaactcatgcttc |
13123354 |
T |
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