View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14849_low_13 (Length: 365)
Name: NF14849_low_13
Description: NF14849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14849_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 42 - 361
Target Start/End: Original strand, 10647674 - 10647990
Alignment:
| Q |
42 |
aaggcgaaggatatcataactcatatgtacatcaattccaatcgtatttgaaaagtaaattataaataactttggcttaatgtctaacatttgataacca |
141 |
Q |
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| T |
10647674 |
aaggcgaaggatatcataactcatatgtacatcaattccaatcgtatttgaaaagtaaattataaataactttggcttaatgtctaacatttgataacca |
10647773 |
T |
|
| Q |
142 |
caaaatttatacagatttatttgtttatttacaagtacatagttataataaaatacttttatcccagcccaatgtcatcatctatcatggcagacaatac |
241 |
Q |
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| T |
10647774 |
caaaatttatacagatttatttgtttatttacaagtacagagttataataaagtacttttatcccaacccaatg---tcatctatcatagcagacaatac |
10647870 |
T |
|
| Q |
242 |
acccaaaagaaaggatgaactaacaaacaaaggccgaatgtaatactatattgctaactagatatagaaaacgaggagcacatgcgaaacgtctctaatg |
341 |
Q |
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| T |
10647871 |
tcccaaaataaaggatgaactaacaatcaaaggctgaatgtcataccatattactaactttatatagtaaactaggagtacatgtgcaacgtctctattg |
10647970 |
T |
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| Q |
342 |
aagtaacacatcactagtta |
361 |
Q |
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||||||||| |||||||||| |
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| T |
10647971 |
aagtaacacctcactagtta |
10647990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 146
Target Start/End: Original strand, 15915218 - 15915324
Alignment:
| Q |
42 |
aaggcgaaggatatcataactcatatgtacatcaattccaatc--gtatttgaaaagtaaattataaataactttggcttaatgtctaacatttgataac |
139 |
Q |
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|||| ||||||||||| |||||| |||||||| ||||| |||| | |||| |||| | ||||||| ||||||||||||||| | |||| ||||||||| |
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| T |
15915218 |
aaggtgaaggatatcacaactcaaatgtacattaattctaatcaagaatttaaaaaatcaattatatataactttggcttaaggcctaatgtttgataac |
15915317 |
T |
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| Q |
140 |
cacaaaa |
146 |
Q |
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|||||| |
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| T |
15915318 |
tacaaaa |
15915324 |
T |
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